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Job 79423 [SSGCID - LemeA.19530.a] [2017-11-20] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] J-binding protein 1 (JBP1) - BATCH:79386

Features and Secondary Structure  
 
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MEPDSKKVKLDIFSFPTARETRTPEEVAESYAEAVKSHPFYDNVHSVIDFYDSGTIKDGRGKIIGVVLREALPKYATSMASELLTSAAVRTSLRSMMFGGESPLSGIAGYFDYRGSPVELKSRKTSFTYEHEAEWPAVFPVIDYVSELYRHVAPKQWKAQNDAIPDLVRIHGTPFSTLTINSRFRTASHTDVGDFDGGYSCIACLDGQFKGLALALDSFGINVLMQPRDVMIFDSHHFHSNTEVELSFSGEDWKRLTCVFYYRAALGEPASYAEYRRRLEKSKQDTSFTPAVSNVRVKENDTNLNRPSPVYPISHSPFWVPMVAHCLQHCASAAQCVHDAMTADGSRLAEVMFGEPLSTLDGIPLRREDEKLKANGDSASRPLSRLGGFSETNLMVTTAVEKKKYLNSEFLSHGISAQLLNMWKQARAKWLELVSREWTHMIALNPERKDFLWKNQSEMNSAFFDLCEVGKQVMLGLLGKEAALPKEEQAFWTMYAVHLNAACAEELHMPHAAMSLHKLNVKLKDFNFGGTRYFKDMPPEEQKRRVERKQRIEEARRHGMSSGSHEKRANWLTNDSFDYQTEDCIVDYAQHKWVPPAVHAKEITKNVRTGELPTREGLVRVLVVLPDPQSKVKCVDCKLEVPETLRCSSEWERLMSSLAVHRVLAAVQRNLQLPDSVTQGNIQIHFAFHSTLPTAVYDFVVLQHVLSCIPEDVLASEYIRRAAALCSGCLFVAETDVQCRQYYTLKCAVRCDYDTVAPLFFQQLHQASYGTKAARVRTKGELESLIPTVCCARYKLKGSPLNTTVHVVSPAPPS
tmhmm (0)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (2%)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (12%)
XXXXXXXXXXX-------------------------------------------------------------------------------------X--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------X--X-------------------------------------------------------------------------------------------------------------------------------------------------------------------XXX
psipred
---------EEEE----------HHHHHHHHHHHHHH--------EEEEE---EEEE----EEEEEEE-----HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH------HHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---EEEE------EEEEE------------------EEEEEEE------EEEEHH--EEEE-----EEEEE-HHH-----EEE------EEEEEEEEEEHHHH-----HHHHHHHHHHHHH-------HHHEEE--------------------HHHHHHHHHHHHHHHH----HHHHH----HHHHHH----------------HHHH-------------------HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH---HHHH-HHHH-EEEEE-----EEE-----HHHHHHHHHHHHHHHHHHHH--------------------------EEEHHH-----HHHHHHHH---------------EEEEEE-----------------------HHHHHHHHH-HHHHHHHHH---------------EEEEEEE-------HHHHHHHHHHHH---HHHHHHHHHHHHHHHH---EEEEEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHH--------EEEEEE------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    28	    0.115
  max. Y     1	    0.141
  max. S     1	    0.199
  mean S     1-0    0.000
       D     1-0    0.086    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.086 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-313     alignment     4ie6A_306     1-447   0.622900   OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
  314-383     alignment     4v4nBG_201     1-125   0.090700   --
  384-565     alignment     2xseA_201     1-160   0.846800   OXIDOREDUCTASE
  566-651     alignment     5jcjC_101     1-239   0.165600   --
  652-814     alignment     5f8eA_301     1-354   0.493400   --

Ginzu Domain Prediction 2     Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-313     alignment     4ie6A_306     1-447   0.622900   OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR
  314-383     msa     4v4nBG_201     1-125   0.090700   --
  384-565     alignment     2xseA_201     1-160   0.846800   OXIDOREDUCTASE
  566-651     msa     5jcjC_101     1-239   0.165600   --
  652-814     alignment     5f8eA_301     1-354   0.493400   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
929439Leishmania mexicana MHOM/GT/2001/U11033 (1.68%)0.01-8141-8141263100814ref|XP_003872831.1|putative DNA J-binding protein [Leishmania mexicana MHOM/GT/...
5661Leishmania donovani3 (1.68%)0.01-8131-813126592813ref|XP_003858833.1|DNA J-binding protein, putative [Leishmania donovani] emb|CB...
435258Leishmania infantum JPCM53 (1.68%)0.01-8131-813126292813ref|XP_001463611.1|putative DNA J-binding protein [Leishmania infantum JPCM5] s...
347515Leishmania major strain Friedlin3 (1.68%)0.01-8121-812125492812ref|XP_001681321.1|putative DNA J-binding protein [Leishmania major strain Frie...
5689Leishmania tarentolae2 (1.12%)0.01-8121-812125188812sp|Q9U6M1.1|JBP1_LEITARecName: Full=Thymine dioxygenase JBP1; AltName: Full=J-bind...
420245Leishmania braziliensis MHOM/BR/75/M29043 (1.68%)0.01-8131-812120683813ref|XP_001562766.1|putative DNA J-binding protein [Leishmania braziliensis MHOM...
5656Crithidia fasciculata1 (0.56%)0.01-8091-809113363810sp|Q9U6M2.1|JBP1_CRIFARecName: Full=Thymine dioxygenase JBP1; AltName: Full=J-bind...
59799Angomonas deanei3 (1.68%)0.01-6581-66485051669gb|EPY31569.1|DNA J-binding protein [Angomonas deanei]
5693Trypanosoma cruzi9 (5.03%)0.05-80822-826109049812ref|XP_811851.1|DnaJ chaperone protein [Trypanosoma cruzi strain CL Brener] ...
0UNIDENTIFIED17 (9.5%)0.05-80822-826107349812gb|ESS65746.1|DnaJ chaperone protein [Trypanosoma cruzi Dm28c]
134006Phytomonas sp. isolate EM13 (1.68%)0.01-8081-802109948811emb|CCW64618.1|unnamed protein product [Phytomonas sp. isolate EM1]
134013Phytomonas sp. isolate Hart13 (1.68%)0.01-8081-802109748813emb|CCW66736.1|unnamed protein product [Phytomonas sp. isolate Hart1]
28005Strigomonas culicis6 (3.35%)0.01-8091-808106848817gb|EPY25659.1|DNA J-binding protein [Strigomonas culicis] gb|EPY28890.1| D...
85056Trypanosoma cruzi marinkellei3 (1.68%)0.05-80822-824108847810gb|EKF30620.1|DnaJ chaperone protein, putative [Trypanosoma cruzi marinkel...
1055687Trypanosoma vivax Y4863 (1.68%)0.05-81022-828105845815emb|CCC53964.1|putative DNA J-binding protein [Trypanosoma vivax Y486]
999953Trypanosoma brucei brucei strain 927/4 GUTat10.13 (1.68%)0.016-81240-838103344809ref|XP_829420.1|chaperone protein DnaJ [Trypanosoma brucei brucei strain 927...
679716Trypanosoma brucei gambiense DAL9723 (1.68%)0.016-81240-838103244809sp|P86937.1|JBP1_TRYBBRecName: Full=Thymine dioxygenase JBP1; AltName: Full=J-bind...
1068625Trypanosoma congolense IL30002 (1.12%)0.0225-8131-59269535604emb|CCC95890.1|unnamed protein product [Trypanosoma congolense IL3000]
1168479Persicivirga phage P12024L1 (0.56%)1E-6245-28727-28324827264ref|YP_006560425.1|hypothetical protein P12024L_26 [Persicivirga phage P12024L]...
1287681Eutypa lata UCREL15 (2.79%)2E-7143-240399-5026527105gb|EMR64486.1|hypothetical protein UCREL1_8553 [Eutypa lata UCREL1]






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