old.robetta.org

A new Robetta server is available for structure prediction.

     
Fragment Libraries    Alanine Scanning    DNA Interface Scan
[ Queue ] [ Submit ]    [ Queue ] [ Submit ]    [ Queue ] [ Submit ]
[ Register / Update ] [ Docs / FAQs ] [ Login ]


     
Job 80581 [BrsuA.18142.a] [2018-01-08] [64.146.x.x] [Structure] [Complete]

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

Images were produced using MolScript and Raster3D!



Features and Secondary Structure  
 
1   .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280 
 
MMILPERLDDLTDRYDAIFCDVWGVVHNGETSFAPAIAALQRARAKGVTIILVTNSPRPHPGVVAQMSLLGVPENAYDRVVTSGDVTRDLIAEGPRRIFHIGCERELAIYDGLDVELVEEFEAAGVVCTGLYDDEVETPEDYRELLQRLRSRNLPFICANPDIMVERGPRLIWCAGALAREYGQLGGRTLIAGKPHRPIYEAALRAVESIRGGSVDKSRILGIGDGVLTDVKGAADFGLDVLYISGGVHAADYAVNGDLDMAKMEAFLEKHGHRPIASLHALV
tmhmm (0)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (4%)
---------------------------------XXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (1%)
XX-XX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
psipred
----HHHHHHHHHH--EEEEE---EEEE-------HHHHHHHHHH----EEEE-------HHHHHHHHH-------HHHH--HHHHHHHHHHHH---EEEE---HHHHHHHHHHH---------EEEEEE--------HHHHHHHHHHHH---EEEEEE-----------------HHHHHHHHH----EE-----HHHHHHHHHHHHHHH-----HHHEEEE------HHHHHHH---EEEEE------HHH-------HHHHHHHHHH-----EEEHHH--

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    39	    0.172
  max. Y    39	    0.137
  max. S    36	    0.164
  mean S     1-38   0.088
       D     1-38   0.114    0.570  NO
Name=tmp_signalp_seq	SP='NO' D=0.114 D-cutoff=0.570 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-283     alignment     2hx1A_303     1-284   0.7314   HYDROLASE


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
1104321Brucella canis HSK A521411 (0.03%)7E-821-2831-283310100283ref|NP_699400.1|HAD superfamily hydrolase [Brucella suis 1330] ref|YP_001594...
520462Brucella pinnipedialis M292/94/11 (0.03%)8E-821-2834-286310100283ref|WP_004687501.1|HAD family hydrolase [Brucella] gb|EEH13555.1| HAD-superfami...
520461Brucella pinnipedialis B2/941 (0.03%)9E-821-2831-283309100283ref|YP_004757419.1|HAD superfamily protein involved in N-acetyl-glucosamine cat...
437684Brucella sp. UK40/991 (0.03%)1E-802-2831-282306100282ref|YP_008841691.1|HAD-superfamily hydrolase [Brucella ceti TE10759-12] ref|YP_...
1198699Brucella canis F7/05A1 (0.03%)9E-812-2831-282306100282ref|WP_006073322.1|TIGR01459 family HAD hydrolase [Brucella] gb|ENQ55833.1| TIG...
693750Brucella sp. BO21 (0.03%)7E-821-2831-28331099283ref|WP_009363790.1|HAD family hydrolase [Brucella sp. BO2] gb|EFM60294.1| HAD-s...
703352Brucella melitensis M5-901 (0.03%)7E-821-2834-28631099283ref|YP_005601814.1|HAD-superfamily hydrolase [Brucella melitensis M5-90] ref|WP...
520464Brucella melitensis bv. 1 str. Rev.11 (0.03%)9E-821-2834-28630999283ref|NP_542023.1|HAD superfamily protein involved in N-acetyl-glucosamine cat...
1104320Brucella abortus A133341 (0.03%)9E-821-2834-28630999283ref|YP_005113787.1|HAD-superfamily hydrolase [Brucella abortus A13334] ref|WP_0...
520465Brucella melitensis bv. 2 str. 63/91 (0.03%)9E-821-2831-28330999283ref|YP_002734026.1|HAD-superfamily hydrolase [Brucella melitensis ATCC 23457] r...
224914Brucella melitensis bv. 1 str. 16M1 (0.03%)1E-811-2831-28330999283ref|WP_004686842.1|HAD family hydrolase [Brucella] gb|EEW87077.1| hydrolase [Br...
520453Brucella abortus bv. 5 str. B31961 (0.03%)1E-811-2831-28330999283ref|YP_418420.1|HAD family hydrolase [Brucella melitensis biovar Abortus 230...
1160235Brucella sp. 63/3111 (0.03%)6E-811-2831-28330799283ref|WP_006163983.1|TIGR01459 family HAD hydrolase [Brucella sp. 63/311] gb|ENT0...
470735Brucella inopinata BO11 (0.03%)9E-812-2831-28230699282ref|WP_008509570.1|HAD family hydrolase [Brucella inopinata] gb|EFM55664.1| HAD...
1244532Brucella melitensis F15/06-71 (0.03%)1E-802-2831-28230699282ref|YP_005598451.1|HAD-superfamily hydrolase [Brucella melitensis M28] ref|YP_0...
1160183Brucella abortus 63/591 (0.03%)2E-802-2831-28230599282ref|WP_006210450.1|TIGR01459 family HAD hydrolase [Brucella abortus] gb|ENP2797...
520448Brucella sp. NVSL 07-00261 (0.03%)2E-801-2831-28330599283ref|WP_008934473.1|HAD family hydrolase [Brucella sp. NVSL 07-0026] gb|EFG35870...
568815Brucella microti CCM 49151 (0.03%)2E-801-2831-28330599283ref|YP_003104993.1|haloacid dehalogenase-like family hydrolase [Brucella microt...
1247411Brucella melitensis B1151 (0.03%)1E-802-2831-28230599282ref|WP_005971884.1|TIGR01459 family HAD hydrolase [Brucella melitensis] gb|ENQ6...
1328346Brucella abortus 87-00951 (0.03%)1E-802-2831-28230599282ref|YP_222999.1|HAD superfamily hydrolase [Brucella abortus bv. 1 str. 9-941...






Robetta is available for NON-COMMERCIAL USE ONLY at this time
[ Terms of Service ]
Copyright © 2004-2011 University of Washington