old.robetta.org

A new Robetta server is available for structure prediction.

     
Fragment Libraries    Alanine Scanning    DNA Interface Scan
[ Queue ] [ Submit ]    [ Queue ] [ Submit ]    [ Queue ] [ Submit ]
[ Register / Update ] [ Docs / FAQs ] [ Login ]


     
Job 81172 [SSGCID - MygeA.00023.a] [2018-02-01] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Inorganic pyrophosphatase - BATCH:81172

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

Images were produced using MolScript and Raster3D!




Plots powered by Plotly.js.

Features and Secondary Structure  
 
1   .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180 
 
MDKFLIDVIVEIPKNSKIKYEYDRQTGQIRVDRILFGSESYPQNYGFIKNTLDWDGDELDCFIFADQPFLPATVVPTRIVGALEMIDDGEIDTKLLGVIDCDPRYKEINQISDLPKHRIEEILIFLKTYKLLQKKTVIIKGLKDVCWAKKEYEICLQLMKDYGHLSKDQFIQKMQILHPEHYQK
tmhmm (0)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (14%)
X--------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXX
psipred
----EEEEEEEE------EEEEE-----EEEEEE---------------HHH-------EEEEEE-------EEEEEEEEEEEEE--------EEEEEE-----HHH---HHH--HHHHHHHHHHHHHH-------EEE-----HHHHHHHHHHHHHHHHHH-----HHHHHHHHHH--HHH--

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    47	    0.103
  max. Y    28	    0.110
  max. S    20	    0.161
  mean S     1-27   0.097
       D     1-27   0.104    0.570  NO
Name=tmp_signalp_seq	SP='NO' D=0.104 D-cutoff=0.570 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-184     alignment     1e9gA_202     1-284   0.8967   HYDROLASE


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
662947Mycoplasma genitalium M22881 (0.04%)6E-561-1841-184222100184ref|NP_073022.1|inorganic pyrophosphatase [Mycoplasma genitalium G37] ref|YP...
662946Mycoplasma genitalium M62821 (0.04%)1E-551-1841-18422199184ref|YP_006600387.1|inorganic pyrophosphatase [Mycoplasma genitalium M6282] ref|...
1112856Mycoplasma pneumoniae 3091 (0.04%)1E-561-1841-18422482184ref|YP_005175769.1|inorganic pyrophosphatase [Mycoplasma pneumoniae 309] ref|YP...
1238993Mycoplasma pneumoniae M129-B71 (0.04%)2E-551-1841-18422082184ref|NP_110216.1|inorganic pyrophosphatase [Mycoplasma pneumoniae M129] ref|Y...
1048830Mycoplasma iowae 6951 (0.04%)1E-566-1843-18122464179ref|WP_004025160.1|inorganic pyrophosphatase [Mycoplasma iowae] gb|EGZ31101.1| ...
272633Mycoplasma penetrans HF-21 (0.04%)6E-576-1833-18022663178ref|NP_757826.1|inorganic pyrophosphatase [Mycoplasma penetrans HF-2] ref|WP...
519851Ureaplasma parvum serovar 6 str. ATCC 278181 (0.04%)1E-546-1843-18121759179ref|NP_078149.1|inorganic pyrophosphatase [Ureaplasma parvum serovar 3 str. ...
708616Mycoplasma gallisepticum str. F1 (0.04%)6E-558-1849-18521958177ref|YP_005880832.1|inorganic pyrophosphatase [Mycoplasma gallisepticum str. F] ...
626096Ureaplasma urealyticum serovar 2 str. ATCC 278141 (0.04%)4E-556-1843-18121958179ref|YP_002284713.1|inorganic pyrophosphatase [Ureaplasma urealyticum serovar 10...
1006581Mycoplasma gallisepticum S61 (0.04%)3E-548-1849-18521658177ref|YP_006581158.1|inorganic pyrophosphatase [Mycoplasma gallisepticum VA94_799...
710128Mycoplasma gallisepticum str. R(high)1 (0.04%)3E-538-1849-18521357177ref|NP_853057.2|Inorganic pyrophosphatase [Mycoplasma gallisepticum str. R(l...
171287Mycoplasma moatsii1 (0.04%)5E-531-1831-18421252184ref|WP_022935579.1|inorganic pyrophosphatase [Mycoplasma moatsii]
1188236Mycoplasma arginini 72641 (0.04%)4E-511-1821-18120649183ref|WP_004414879.1|Inorganic pyrophosphatase [Mycoplasma arginini] gb|ENY70002....
1034808Mycoplasma anatis 13401 (0.04%)1E-483-1822-18219849181ref|WP_006886857.1|inorganic pyrophosphatase [Mycoplasma anatis] gb|EGS28946.1|...
747682Mycoplasma alligatoris A21JP21 (0.04%)2E-523-1842-18421048183ref|WP_005683458.1|inorganic pyrophosphatase [Mycoplasma alligatoris] gb|EFF415...
512564Mycoplasma crocodyli MP1451 (0.04%)4E-513-1832-18320648182ref|YP_003559923.1|inorganic diphosphatase [Mycoplasma crocodyli MP145] ref|WP_...
289397Mycoplasma bovis PG451 (0.04%)9E-514-1833-18320548181ref|YP_004056450.1|inorganic diphosphatase [Mycoplasma bovis PG45] ref|WP_01345...
767465Mycoplasma bovis HB08011 (0.04%)7E-514-1833-18320548181ref|YP_004683248.1|inorganic pyrophosphatase [Mycoplasma bovis Hubei-1] ref|YP_...
347257Mycoplasma agalactiae PG21 (0.04%)4E-504-1833-18320348181ref|YP_001256336.1|inorganic pyrophosphatase [Mycoplasma agalactiae PG2] ref|WP...
496833Mycoplasma fermentans PG181 (0.04%)6E-524-18318-19820947181ref|YP_007762361.1|hypothetical protein [Mycoplasma fermentans PG18] ref|WP_015...






Robetta is available for NON-COMMERCIAL USE ONLY at this time
[ Terms of Service ]
Copyright © 2004-2011 University of Washington