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Job 81177 [SSGCID - MygeA.00430.a] [2018-02-01] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Tryptophan--tRNA ligase - BATCH:81172

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

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Features and Secondary Structure  
 
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MIKRAITGIQASGRQHLGNFLGVMQGLKQLQSQYQLFLFVADLHAITVDFEPTMLKDNNLQLVKTLLALGLDYGKVNLFLQSDLMEHTMLGYLMLTQSNLGELQRMTQFKTKKLAQKRNSNNTITIPTGLLTYPVLMAADILLYQPDIVPVGNDQKQHLELTNDLAKRVAKKFKLKLKLPVFIENKDTNRIMDLSNPLKKMSKSNPDQNGVIYLDDSKETIIKKVRKATTDSFNKIRFAKKTQPGVTNLLVILTALLKEEVNHNLSKKIGSDLVKYYQNKSYLDLKNDLSSAVINVIESLKFKKAQITDEMVLKVLNDGKNQAKKVADETLKMFYKAFGLTSNQLFD
tmhmm (0)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (4%)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (9%)
XX------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX-----------------------------------------------------------------------XXXXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------X
psipred
---EEEEEE------HHHHHHHHHHHHHHH----EEEEEEE-EEEE-----HHHHHHHHHHHHHHHHHH------EEEEE------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------EE----------------EEE-----HHHHHHHHHHHHH------------------HHHHHH------HHHH--------EEEE---HHHHHHHHH----------------------HHHHHHHH----HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    46	    0.128
  max. Y     5	    0.138
  max. S    45	    0.224
  mean S     1-4    0.178
       D     1-4    0.160    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.160 D-cutoff=0.450 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
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Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-347     alignment     5v0iB_201     1-326   0.8175   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
488339synthetic Mycoplasma genitalium JCVI-1.01 (0.03%)1E-951-3471-347356100347ref|NP_072788.1|tryptophanyl-tRNA synthetase [Mycoplasma genitalium G37] ref...
722438Mycoplasma pneumoniae FH1 (0.03%)1E-932-3421-34134969341ref|YP_005881289.1|tryptophan--tRNA ligase [Mycoplasma pneumoniae FH] ref|WP_01...
708616Mycoplasma gallisepticum str. F1 (0.03%)7E-841-3411-34931746351ref|YP_005880536.1|tryptophanyl-tRNA synthetase [Mycoplasma gallisepticum str. ...
146774Callosobruchus chinensis1 (0.03%)5E-13114-1911-79824379gb|ABU55334.1|tryptophanyl-tRNA synthetase [Callosobruchus chinensis] gb|A...
649639Bacillus cellulosilyticus DSM 25221 (0.03%)1E-1192-3451-32943442345ref|YP_004095894.1|tryptophanyl-tRNA synthetase [Bacillus cellulosilyticus DSM ...
1300222Brevibacillus borstelensis AK11 (0.03%)1E-1182-3421-32743042342ref|WP_003388062.1|tryptophanyl-tRNA synthetase [Brevibacillus borstelensis] gb...
634997Mycoplasma hyorhinis DBS 10501 (0.03%)2E-921-3401-32734542340ref|YP_005905138.1|tryptophanyl-tRNA synthetase [Mycoplasma hyorhinis MCLD] ref...
872331Mycoplasma hyorhinis HUB-11 (0.03%)3E-921-3401-32734442340ref|YP_003856593.1|Tryptophanyl-trna synthetase protein [Mycoplasma hyorhinis H...
9598Pan troglodytes3 (0.08%)7E-612-18334-21024042183ref|NP_957715.1|tryptophan--tRNA ligase, mitochondrial isoform 2 precursor [...
580331Thermoanaerobacter italicus Ab91 (0.03%)1E-1262-3411-32445641340ref|YP_003477072.1|tryptophanyl-tRNA synthetase [Thermoanaerobacter italicus Ab...
583358Thermoanaerobacter mathranii subsp. mathranii str. A31 (0.03%)1E-1252-3411-32445441340ref|YP_003677023.1|tryptophanyl-tRNA synthetase [Thermoanaerobacter mathranii s...
697303Thermoanaerobacter wiegelii Rt8.B11 (0.03%)1E-1242-3411-32445241340ref|YP_004820114.1|tryptophanyl-tRNA synthetase [Thermoanaerobacter wiegelii Rt...
273068Thermoanaerobacter tengcongensis MB41 (0.03%)1E-1232-3431-32644841342ref|NP_623071.1|tryptophanyl-tRNA synthetase [Thermoanaerobacter tengcongens...
391606Carboxydibrachium pacificum DSM 126532 (0.05%)1E-1223-3434-32844541341ref|WP_009611059.1|tryptophanyl-tRNA synthetase [Caldanaerobacter subterraneus]...
1131730Bacillus vireti LMG 218341 (0.03%)1E-1222-3451-32944541345ref|WP_024031034.1|tryptophanyl-tRNA synthetase [Bacillus vireti] gb|ETI66091.1...
997346Desmospora sp. 84371 (0.03%)1E-1192-34316-34243441343ref|WP_009709451.1|tryptophanyl-tRNA synthetase [Desmospora sp. 8437] gb|EGK126...
889513Corynebacterium pseudotuberculosis I191 (0.03%)1E-1172-34154-38242841343ref|YP_005682822.1|tryptophanyl-tRNA synthetase [Corynebacterium pseudotubercul...
446462Actinosynnema mirum DSM 438272 (0.05%)1E-1174-34214-33842841342ref|YP_003104117.1|tryptophanyl-tRNA synthetase [Actinosynnema mirum DSM 43827]...
1168865Corynebacterium pseudotuberculosis 2581 (0.03%)1E-1162-3419-33742541343ref|YP_005374497.1|trpS gene product [Corynebacterium pseudotuberculosis P54B96...
1161911Corynebacterium pseudotuberculosis Cp1621 (0.03%)1E-1162-34127-35542541343ref|YP_003782866.1|tryptophanyl-tRNA synthetase [Corynebacterium pseudotubercul...






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