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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 .
	MSDRLNDQAQHRLQKLLRLKQTNNDPYLVTKTSLTHSSKSFQVEFEKCSEEELKKKATVSLAGRIIAIRQTFLIIQDFDGQVQLYINKKIHPKLFDYFNEFVDIGDQIVVSGKPMLTKTKVLTLAVEEMKIIAKCLLVPPEKWHGLTDIETRARKRFLDLTYNLAMRDVFLKRTKIIKSIRSFLDQNGFIEVETPTLQAVLGGANAKPFKTHYNALKADFYLRIANEIALKKLIIGGFNKVYEMGKMFRNEGVDTTHNPEFTSIEIYQAYADFEVMLVLVEKLIQSLCESLNQFSFNWNNKTINLKTPFHKITMVELIKKVTGIDFNSVKDDQSAILLAEKHHVKLAKHQQNKQHIINLFFEQFCEQTLIEPTFVTHYPKAVSPLAKQDPSNPEFTQRFELFINGKEIANAYSELNDPLEQRKRFEQQLEEKQLGNDETSELDESFLEALSFGMVNTAGLGIGIDRLVMLLCECNSIRDVVFFPQLREHK
tmhmm (0)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (2%)	-----------XXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (3%)	XXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------X-XXXXXXX----------------------------------------------------XXX
psipred	------HHHHHHHHHHHHHHH----------------HHHHHHHH------------EEEEEEEEEE----EEEEEE--EEEEEEEE----HHHHHHHHH--EEEEEEEEEEEEE------EEEEEEEEEEEE---------------HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---EEEE---------------EEEEE-------HHHHHHHHHHHHHHH-----EEEE---EE-----------HHH-EEEHH---HHHHHHHHHHHHHHHHHHH---------EEE-------EEEHHHHHHHH-----HHHHHHHHHHHH---------------HHHHHHHHH-EEE------EEEE-------HHHH---------EEEEEEE--EEEE--EEEE--HHHHHHHHHHHHHHHH------HHHHHHHHHHHH-------EEEEHHHHHHHHH-----HHHEE---------

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    43	    0.122
  max. Y     3	    0.144
  max. S     2	    0.231
  mean S     1-2    0.220
       D     1-2    0.180    0.570  NO
Name=tmp_signalp_seq	SP='NO' D=0.180 D-cutoff=0.570 Networks=SignalP-noTM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-490	alignment	3bjuA_206	1-504	0.9316	LIGASE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
710128	Mycoplasma gallisepticum str. R(high)	1 (0.03%)	1E-153	1-489	1-492	549	54	492	ref|NP_852857.2|	lysyl-tRNA synthetase [Mycoplasma gallisepticum str. R(low)]...
708616	Mycoplasma gallisepticum str. F	1 (0.03%)	1E-153	1-489	1-492	547	54	492	ref|YP_005880366.1|	lysyl-tRNA synthetase [Mycoplasma gallisepticum str. F] ref|...
515608	Ureaplasma parvum serovar 1 str. ATCC 27813	1 (0.03%)	1E-146	1-489	1-491	525	51	491	ref|WP_006689293.1|	lysyl-tRNA synthetase [Ureaplasma parvum] gb|EDT49142.1| lys...
550748	Ureaplasma urealyticum serovar 4 str. ATCC 27816	1 (0.03%)	1E-148	1-489	1-491	532	50	491	ref|WP_004026253.1|	lysyl-tRNA synthetase [Ureaplasma urealyticum] gb|EDX53135.1...
626096	Ureaplasma urealyticum serovar 2 str. ATCC 27814	2 (0.05%)	1E-148	1-489	1-491	532	50	491	ref|YP_002284482.1|	lysyl-tRNA synthetase [Ureaplasma urealyticum serovar 10 str...
2115	Mycoplasma fermentans	1 (0.03%)	2E-63	197-454	2-256	250	49	258	gb|ABQ59294.1|	putative lysyl-tRNA synthetase [Mycoplasma fermentans]
55603	Mycoplasma caviae	1 (0.03%)	2E-63	197-454	2-256	250	49	258	gb|ABQ59291.1|	putative lysyl-tRNA synthetase [Mycoplasma caviae]
632516	Caldicellulosiruptor lactoaceticus 6A	1 (0.03%)	1E-167	2-489	10-496	593	48	494	ref|YP_004798533.1|	Lysyl-tRNA synthetase [Caldicellulosiruptor lactoaceticus 6A...
495036	Geobacillus sp. G11MC16	2 (0.05%)	1E-157	48-487	1-445	563	48	446	ref|WP_008881723.1|	lysyl-tRNA synthetase [Geobacillus sp. G11MC16] gb|EDY04519....
608506	Caldicellulosiruptor obsidiansis OB47	1 (0.03%)	1E-171	2-489	8-494	608	47	494	ref|YP_003839919.1|	lysyl-tRNA synthetase [Caldicellulosiruptor obsidiansis OB47...
351627	Caldicellulosiruptor saccharolyticus DSM 8903	2 (0.05%)	1E-170	2-489	8-494	605	47	494	ref|YP_001179637.1|	lysyl-tRNA synthetase [Caldicellulosiruptor saccharolyticus ...
632518	Caldicellulosiruptor owensensis OL	1 (0.03%)	1E-170	2-489	8-494	603	47	494	ref|YP_004001918.1|	lysyl-tRNA synthetase [Caldicellulosiruptor owensensis OL] r...
1352	Enterococcus faecium	2 (0.05%)	1E-169	3-488	10-499	602	47	492	ref|WP_023042743.1|	lysyl-tRNA synthetase [Enterococcus faecium] gb|ERT32438.1| ...
52765	Caldicellulosiruptor kristjanssonii	1 (0.03%)	1E-169	2-489	10-496	601	47	494	ref|YP_004026635.1|	lysyl-tRNA synthetase [Caldicellulosiruptor kristjanssonii I...
521460	Caldicellulosiruptor bescii DSM 6725	1 (0.03%)	1E-169	2-489	10-496	600	47	494	ref|YP_002572556.1|	lysyl-tRNA synthetase [Caldicellulosiruptor bescii DSM 6725]...
1138931	Enterococcus faecium EnGen0051	1 (0.03%)	1E-169	3-487	10-498	600	47	491	ref|WP_002346893.1|	lysyl-tRNA synthetase [Enterococcus faecium] gb|ELB68910.1| ...
1244155	Enterococcus faecium SD3B-2	2 (0.05%)	1E-169	3-487	10-498	600	47	491	ref|WP_016628008.1|	lysine--tRNA ligase [Enterococcus faecium] gb|EPI11649.1| ly...
632292	Caldicellulosiruptor hydrothermalis 108	1 (0.03%)	1E-169	2-489	10-496	600	47	494	ref|YP_003993075.1|	lysyl-tRNA synthetase [Caldicellulosiruptor hydrothermalis 1...
1295527	Enterococcus faecium CRL1879	2 (0.05%)	1E-169	3-487	10-498	600	47	491	ref|YP_005355794.1|	lysyl-tRNA synthetase [Enterococcus faecium Aus0004] ref|YP_...
1244154	Enterococcus faecium SD2A-2	1 (0.03%)	1E-169	3-487	10-498	600	47	491	ref|WP_002290948.1|	lysyl-tRNA synthetase [Enterococcus faecium] gb|EEV62962.1| ...