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Job 81208 [SSGCID - MygeA.20067.a] [2018-02-01] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Cytadherence high molecular weight protein 3 (HMW3) (MG317) - BATCH:81172

Features and Secondary Structure  
 
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MNDKQKAKINKAYNKLLKKINKRYPDVSVVYARDHKNKVHALYQDPESGNIFSLEKRKQLASNYPLFELTSDNPISFTNNIVSLNAYDDKNNLVTVQYDQDNNTFYDQNGNVLDVSSYTDEKKVPLINYLSSTQTSQEQPTQQDYPSIDAGLPKIEVDDQPKAAQHTTLETESEPDVFELNDSLNQPQQPTENLGDDQFVEKEVPPTQQLHQDLVHQQPVQVDSGSQNHSFNNSPSLKPPLVNKPAKLVQPEVKHIPQVEVQPKPQIVEPKIEPKPEVKHVSHVEIQPKPEVKPVVDSVPEVKQPEVKHVPHVEVQPKPVVDLKPQRIEPRIESKPEVIKHIPQVEVQPKAQMVEPRIEPKPETKYIPQVESTPQVEVHHWKPEVKTEYQPQQPLPTSGLQIKVVPRSAALLQSKLDTGFQPRQVERTTDSDITVSVSSHASLLEKINALNHQRIMSDIALKSDNTIKSSNFSRFYPENEYVATKYSDPLYSDTNQSLTSDRFSLDFDYTPKSRVNNYTPLRSTNFQNNAISNYRFSRTPSSYYPLTRRPWRLTNISSYRSSFHSPTRLSSFRRTSLPFSSSYDGLRRYPSRSYWSKDF
tmhmm (0)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (4%)
----------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (74%)
XXXXXXXXXXX-----------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------------XXXXXXXXX--------------------------------XXXXXXXXXXX-XXXXXXXXXX
psipred
--HHHHHHHHHHHHHHHHHHHH-----EEEEEE------------------------------------------------------------EEEE-------HHH-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HHH---------------------------------------------------------EE------------------------------EE-------------------------------------------------------HHHH----

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    42	    0.111
  max. Y     8	    0.183
  max. S     6	    0.437
  mean S     1-7    0.370
       D     1-7    0.256    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.256 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-44     alignment     4devA_101     1-372   0.585200   HYDROLASE
  45-109     alignment     3jcmQ_308     1-89   0.183900   --
  110-353     alignment     3j0fE_101     1-438   0.0317   VIRUS
  354-405     alignment     2miiA_101     1-197   0.1236   --
  406-501     alignment     1cc7A_103     1-72   0.436100   METAL TRANSPORT
  502-599     alignment     3zh7A_101     1-127   0.100500   CELL ADHESION

Ginzu Domain Prediction 2     Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-44     alignment     4devA_101     1-372   0.585200   HYDROLASE
  45-109     msa     3jcmQ_308     1-89   0.183900   --
  110-353     msa     --     --   3.212997   --
  354-405     cutpref     --     --   0.000000   --
  406-501     alignment     1cc7A_103     1-72   0.436100   METAL TRANSPORT
  502-599     msa     3zh7A_101     1-127   0.100500   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
488339synthetic Mycoplasma genitalium JCVI-1.01 (0.36%)9E-901-5991-599338100599ref|NP_072984.1|HMW3 cytadherence accessory protein [Mycoplasma genitalium G...
662946Mycoplasma genitalium M62821 (0.36%)1E-891-5991-599337100599ref|YP_006600347.1|HMW3 cytadherence accessory protein [Mycoplasma genitalium M...
663918Mycoplasma genitalium M23211 (0.36%)2E-891-5991-599336100599ref|YP_006599860.1|HMW3 cytadherence accessory protein [Mycoplasma genitalium M...
662945Mycoplasma genitalium M63201 (0.36%)6E-881-5991-59933198599ref|YP_006600851.1|HMW3 cytadherence accessory protein [Mycoplasma genitalium M...
662947Mycoplasma genitalium M22881 (0.36%)6E-881-5991-59933198599ref|YP_006601355.1|HMW3 cytadherence accessory protein [Mycoplasma genitalium M...
1238993Mycoplasma pneumoniae M129-B71 (0.36%)1E-421-5991-67218128675ref|NP_110140.1|cytadherence accessory protein HMW3 [Mycoplasma pneumoniae M...
1112856Mycoplasma pneumoniae 3091 (0.36%)1E-421-5991-67218128675ref|YP_005175694.1|cytadherence accessory protein HMW3 [Mycoplasma pneumoniae 3...
722438Mycoplasma pneumoniae FH1 (0.36%)1E-421-5991-67218128675ref|YP_005881458.1|cytadherence high molecular weight protein 3 [Mycoplasma pne...
7245Drosophila yakuba1 (0.36%)1E-14498-583588-676892390ref|XP_002092528.1|GE14248 [Drosophila yakuba] gb|EDW92240.1| GE14248 [Drosophi...
7220Drosophila erecta1 (0.36%)1E-13462-583559-6828521126ref|XP_001976319.1|GG22814 [Drosophila erecta] gb|EDV56719.1| GG22814 [Drosophi...
7217Drosophila ananassae1 (0.36%)5E-38206-583308-67516619383ref|XP_001960813.1|GF13555 [Drosophila ananassae] gb|EDV37635.1| GF13555 [Droso...
313612Lyngbya sp. PCC 81061 (0.36%)2E-18280-4251439-156810019146ref|WP_009782560.1|hypothetical protein [Lyngbya sp. PCC 8106] gb|EAW39105.1| h...
1309Streptococcus mutans2 (0.72%)1E-1429-318729-9908919291emb|CAA37697.1|sr [Streptococcus mutans]
1313Streptococcus pneumoniae19 (6.86%)5E-43112-536127-53218218427ref|WP_000458114.1|hypothetical protein [Streptococcus pneumoniae]
869304Streptococcus pneumoniae SPN0341831 (0.36%)8E-4091-53650-49917218457ref|YP_007815470.1|choline-binding surface protein A [Streptococcus pneumoniae ...
412694Bacillus thuringiensis str. Al Hakam2 (0.72%)1E-26142-4403265-356212818300ref|YP_897170.1|cell surface anchor [Bacillus thuringiensis str. Al Hakam] r...
3702Arabidopsis thaliana3 (1.08%)6E-20126-43755-37010618317gb|AAK96839.1|periaxin-like protein [Arabidopsis thaliana]
526973Bacillus cereus m12931 (0.36%)3E-1593-455456-8429118388ref|WP_000888070.1|cell division protein FtsK [Bacillus cereus] gb|EEK42754.1| ...
1154935Streptococcus agalactiae GB008841 (0.36%)5E-11203-430373-5997718229ref|NP_689049.1|pathogenicity protein [Streptococcus agalactiae 2603V/R] ref...
1311Streptococcus agalactiae3 (1.08%)3E-9165-35942-2367118197gb|AAL56267.1|AF362704_1C protein immunoglobulin-A-binding beta antigen [Streptococc...






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