old.robetta.org

Click the icons below each image to download the prediction in PDB format ( )

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 . 790 . 800
	MLISKKTLGVLIPDIFSFSNDQIAQKLEQMGIEVESIKQFNSPDYLQLAKVVSIQPHPHDNKLFICELQIDKNKFINVVSNANNINNPDNINKFVIVAKKGTELLNGLIVKTQNIKGIISEGILCSYIDINPFSRQIIEKTEVADAIIIDHVSNDHDWNQYLSFLSLDDVIFDVKTPTNRADLHSLIFLAKELGVLLKTKTFLKQKSSVVNHDFFKFPLNLKNKLKANYFGGLFLRQINQHSSPWTVKGLLINQMIKPVNYYVDKANLVTVFTAQPIHCHDADRIVGNIELKQATHNETFVGLDDKQYEIEPGDIVVCDEKGIIALVGIIGSKRTMVQPTTTNIFFEVVNCNSETIKQTAKRFLINNFASKFMVKPISLLATDNCLNYLQNSLLTTDNIGKISHFSSSLKVEPFSKKLTVNFHKIRQLIGIEKKELTDQTIKKSLSQLGFKVDNQLLKIPSYRQDINTWQDISEEIVKLIDINKLKPIGITSSFNFEKSSYFNTFNALTKLRKKLQTLGFHNVITYQLTDQKSAKTFNLFNLENFITIKNPVSQNHSVMRVSLIDSLLKVLKTNNNYKNELVNIFEFSFIKTQNNSELHLAVLWVEKLFTSSFNPMQGISNDVFTMKGLAKLIVANLGFSCDFEPLDDSDYFVNNQSLKIVVFNEQIGFIGLIKESLLNNYDLNNKPIYCLEINLDRMLSSLNRIEKNYLGYSKLQPVCKDLTFSFTNPASHFDQFANMIKRITGIESWKLISVFETMQNNQLITKYTVRYFLKNDANKPLTNQTIELITNNLKLQCEKLKIKLDI
tmhmm (0)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (4%)	---------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (3%)	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
psipred	----HHHHHHHH-------HHHHHHHHHH-----EEEEE------EEEEEEEEEEEE-----EEEEEEE----EEEEEEE------HHH----EEEEEE--------EEEEE--------HHHHHH--------------------------------------------EEEEE-------EEEEE-HHHHHHHHH-------------------------------EEEEEE---------HHHHHHHHHH-------HHHHHHHEEE-------EEEHHHH----EEEEE-----EEEE----EEE--HHHEEEE----EEEEEEEE-----EEE----EEEEEE----HHHHHHHHHHH----HHHH-------HHHHHHHHHHHHHHHHHHH--------EE----------EEEEHHHHHHHH--------HHHHHHHHH------EE-EEE------------HHHHHHHHHH----------------------HHHHHHHHHHHHHHH---EEEEE-----HHHHHHH-------EEEE-------HHHH-----HHHHHHHHHHHH-----EEEEEEEEEE-------EEEEEEE-----------------HHHHHHHHHHHHHHH---EEEEE-----------EEEEEE--EEEEEEEEE-HHHHHHH-----EEEEEEEE-HHHH-------HHHHH------EEEEEEEEE-----HHHHHHHHHHH-----EEEEEEEEE---------EEEEEEEEE--------HHHHHHHHHHHHHHHHHH--EE--

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    27	    0.238
  max. Y    27	    0.244
  max. S    23	    0.346
  mean S     1-26   0.242
       D     1-26   0.244    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.244 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-806	alignment	3pcoB_303	1-795	0.7708	LIGASE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
451754	Clostridium perfringens B str. ATCC 3626	1 (0.03%)	2E-9	247-352	87-194	72	30	108	ref|WP_004456252.1|	tRNA synthetase subunit beta [Clostridium perfringens] gb|ED...
515609	Ureaplasma parvum serovar 14 str. ATCC 33697	1 (0.03%)	1E-114	1-800	1-772	421	28	802	ref|WP_006689096.1|	phenylalanyl-tRNA synthetase subunit beta [Ureaplasma parvum...
515608	Ureaplasma parvum serovar 1 str. ATCC 27813	1 (0.03%)	1E-113	1-800	1-772	417	28	802	ref|WP_006689335.1|	phenylalanyl-tRNA synthetase subunit beta [Ureaplasma parvum...
626096	Ureaplasma urealyticum serovar 2 str. ATCC 27814	2 (0.05%)	1E-117	1-800	1-772	429	27	802	ref|WP_004027457.1|	phenylalanyl-tRNA synthetase subunit beta [Ureaplasma urealy...
626095	Ureaplasma urealyticum serovar 8 str. ATCC 27618	1 (0.03%)	1E-116	1-800	1-772	426	27	802	ref|WP_004025799.1|	phenylalanyl-tRNA synthetase subunit beta [Ureaplasma urealy...
515611	Ureaplasma urealyticum serovar 13 str. ATCC 33698	1 (0.03%)	1E-116	1-800	1-772	425	27	802	ref|WP_004027250.1|	phenylalanyl-tRNA synthetase subunit beta [Ureaplasma urealy...
565575	Ureaplasma urealyticum serovar 10 str. ATCC 33699	1 (0.03%)	1E-115	1-800	1-772	424	27	802	ref|YP_002284892.1|	phenylalanyl-tRNA synthetase subunit beta [Ureaplasma urealy...
519849	Ureaplasma urealyticum serovar 7 str. ATCC 27819	1 (0.03%)	1E-115	1-800	1-772	423	27	802	ref|WP_004026648.1|	phenylalanyl-tRNA synthetase subunit beta [Ureaplasma urealy...
519851	Ureaplasma parvum serovar 6 str. ATCC 27818	1 (0.03%)	1E-114	1-800	1-772	421	27	803	ref|WP_006688524.1|	phenylalanyl-tRNA synthetase subunit beta [Ureaplasma parvum...
1001583	Lactobacillus brevis KB290	2 (0.05%)	3E-10	247-355	88-198	75	27	112	ref|YP_794599.1|	hypothetical protein LVIS_0406 [Lactobacillus brevis ATCC 36...
1151413	Clostridium difficile P31	1 (0.03%)	4E-8	243-352	81-193	67	27	113	ref|YP_003215255.1|	hypothetical protein CD196_2235 [Clostridium difficile CD196...
420246	Geobacillus thermodenitrificans NG80-2	2 (0.05%)	1E-8	36-126	547-627	70	26	92	ref|YP_001124162.1|	methionine-tRNA ligase/methionyl-tRNA synthetase [Geobacillu...
1201032	Campylobacter jejuni subsp. jejuni PT14	1 (0.03%)	3E-7	37-128	525-607	65	26	93	ref|YP_002344245.1|	methionyl-tRNA synthetase [Campylobacter jejuni subsp. jejun...
1232203	Bacillus thuringiensis serovar aizawai str. Leapi01	1 (0.03%)	3E-28	20-129	72-174	134	25	110	ref|WP_002001249.1|	tRNA-binding protein [Bacillus cereus group] gb|EEK48289.1| ...
405535	Bacillus cereus AH820	1 (0.03%)	1E-27	20-129	75-177	132	25	110	ref|YP_002453755.1|	putative tRNA binding domain protein [Bacillus cereus AH820]...
469597	Coprobacillus sp. 8_2_54BFAA	1 (0.03%)	9E-25	6-131	54-174	122	25	129	ref|WP_003538266.1|	hypothetical protein [Erysipelotrichaceae] gb|EDS17675.1| tR...
393123	Listeria monocytogenes FSL N1-017	1 (0.03%)	4E-11	36-131	560-646	77	25	97	ref|WP_003728179.1|	methionyl-tRNA synthetase [Listeria monocytogenes] gb|EEW196...
1027396	Listeria monocytogenes str. Scott A	1 (0.03%)	4E-11	36-131	560-646	77	25	97	ref|WP_003734706.1|	methionyl-tRNA synthetase [Listeria monocytogenes] gb|EFF966...
904325	Staphylococcus epidermidis VCU071	1 (0.03%)	0.0	1-805	1-800	854	24	821	ref|WP_002473288.1|	phenylalanyl-tRNA synthase subunit beta [Staphylococcus epid...
979219	Staphylococcus epidermidis NIHLM001	1 (0.03%)	0.0	1-805	1-800	853	24	821	ref|WP_002503093.1|	phenylalanyl-tRNA synthase subunit beta [Staphylococcus epid...