old.robetta.org

A new Robetta server is available for structure prediction.

     
Fragment Libraries    Alanine Scanning    DNA Interface Scan
[ Queue ] [ Submit ]    [ Queue ] [ Submit ]    [ Queue ] [ Submit ]
[ Register / Update ] [ Docs / FAQs ] [ Login ]


     
Job 81212 [SSGCID - MygeA.20091.a] [2018-02-01] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] 2,3-bisphosphoglycerate-independent phosphoglycerate mutase - BATCH:81172

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

Images were produced using MolScript and Raster3D!




Plots powered by Plotly.js.

Features and Secondary Structure  
 
1   .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    
 
MHKKVLLAILDGYGISNAIYGNAVQNANTPMLDELINSYPCVLLDASGEAVGLPMGQIGNSEVGHLNIGAGRVVYTGLSLINQHIKDRSFFANKAFLKTIEHVEKNHSKIHLIGLFSNGGVHSHNEHLLALIELFSKHAKVVLHLFGDGRDVAPCSLKQDLEKLMIFLKNYPNVVIGTIGGRYYGMDRDQRWDREMIAYKALLGVSKNKFNDPIGYIETQYQNQITDEFIYPAINANLNSDQFALNNNDGVISFNFRPDRARQMSHLIFNSNYYNYQPELKRKENLFFVTMMNYEGIVPSEFAFPPQTIKNSLGEVIANNNLKQLRIAETEKYAHVTFFFDGGFEVNLSNETKTLIPSLKVATYDLAPEMSCKAITDALLEKLNNFDFTVLNFANPDMVGHTGNYQACIKALEALDVQIKRIVDFCKANQITMFLTADHGNAEVMIDNNNNPVTKHTINPVPFVCTDKNVNFNQTGILANIAPTILEYLNLSKPKEMTAKSLLKNNN
tmhmm (0)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (1%)
X----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXX
psipred
----EEEEEE-------------EEE----HHHHHH-----EEEEE-HHH------------HHEEE----EEEE---HHHHHHHH---HH--HHHHHHHHHHHH---EEEEEEE---------HHHHHHHHHHHHHH--EEEEEEE--------HHHHHHHHHHHHHHH---EEEEEE--EEEEE-----HHHHHHHHHHHH---------HHHHHHHHH-----HHH---EEEE-------EE----EEEEEE-----HHHHHHHHH----------------EEEEEEEEE-----EEEEE-----------EEEE---EEEEE----------EE------------EEEEE-------------HHHHHHHHHHHHH------EEEE---HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH---EEEEE--------------------------EEEE---EEE-----HHHHHHHHHHH-------------------

# SignalP-4.0 gram- predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    19	    0.180
  max. Y    19	    0.266
  max. S    17	    0.625
  mean S     1-18   0.334
       D     1-18   0.298    0.570  NO
Name=tmp_signalp_seq	SP='NO' D=0.298 D-cutoff=0.570 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-507     alignment     5vpuA_203     1-509   0.9854   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
1112856Mycoplasma pneumoniae 3091 (0.03%)0.01-5041-50567871505ref|YP_005175878.1|phosphoglycerate mutase [Mycoplasma pneumoniae 309] ref|YP_0...
262723Mycoplasma synoviae 531 (0.03%)1E-1773-5052-50162852505sp|Q4A5A8.2|GPMI_MYCS5RecName: Full=2,3-bisphosphoglycerate-independent phosphogly...
1116211Mycoplasma hyopneumoniae 168-L1 (0.03%)0.01-5061-50464451508ref|YP_005888702.1|2,3-bisphosphoglycerate-independent phosphoglycerate mutase ...
512564Mycoplasma crocodyli MP1451 (0.03%)0.03-5052-50164051505ref|YP_003559716.1|2,3-bisphosphoglycerate-independent phosphoglycerate mutase ...
872331Mycoplasma hyorhinis HUB-11 (0.03%)1E-1771-50510-51362951508ref|YP_003856589.1|2,3-bisphosphoglycerate-independent phosphoglycerate mutase ...
634997Mycoplasma hyorhinis DBS 10501 (0.03%)1E-1771-5051-50462851508ref|YP_005205342.1|2,3-bisphosphoglycerate-independent phosphoglycerate mutase ...
45361Mycoplasma conjunctivae1 (0.03%)1E-1771-5052-50462751507ref|YP_002961170.1|phosphoglyceromutase [Mycoplasma conjunctivae HRC/581] ref|W...
747682Mycoplasma alligatoris A21JP21 (0.03%)0.03-5052-50164450505ref|WP_005683844.1|phosphoglycerate mutase [Mycoplasma alligatoris] gb|EFF41224...
347257Mycoplasma agalactiae PG21 (0.03%)1E-1773-5052-49862850506ref|YP_001256827.1|phosphoglyceromutase [Mycoplasma agalactiae PG2] ref|WP_0119...
243272Mycoplasma arthritidis 158L3-12 (0.06%)1E-1751-5061-50262250510ref|YP_002000094.1|phosphoglyceromutase [Mycoplasma arthritidis 158L3-1] ref|WP...
941640Mycoplasma haemofelis str. Langford 11 (0.03%)0.01-5031-50365449507ref|YP_004193368.1|2,3-bisphosphoglycerate-independent phosphoglycerate mutase ...
859194Mycoplasma haemofelis Ohio21 (0.03%)0.01-5031-50365449507ref|YP_005906903.1|2,3-bisphosphoglycerate-independent phosphoglycerate mutase ...
2110Mycoplasma agalactiae2 (0.06%)1E-1773-5052-49862849506ref|YP_003515941.1|2,3 bisphosphoglycerate independentphosphoglycerate mutase [...
289397Mycoplasma bovis PG451 (0.03%)1E-1773-5052-49862749506ref|YP_004056568.1|2,3-bisphosphoglycerate-independent phosphoglycerate mutase ...
69896Candidatus Phytoplasma solani1 (0.03%)8E-66331-5051-17625849177emb|CAJ98739.1|phosphoglyceromutase [Candidatus Phytoplasma solani]
986075Caldalkalibacillus thermarum TA2.A11 (0.03%)0.03-5055-51284248508ref|WP_007503206.1|phosphoglyceromutase [Caldalkalibacillus thermarum] gb|EGL83...
509192Thermoanaerobacter ethanolicus JW 2001 (0.03%)0.03-5044-51181848509ref|YP_001664730.1|phosphoglyceromutase [Thermoanaerobacter pseudethanolicus AT...
880478Thermoanaerobacter siderophilus SR41 (0.03%)0.03-5044-51181748509ref|WP_006569978.1|phosphoglyceromutase [Thermoanaerobacter siderophilus] gb|EI...
413999Clostridium botulinum A str. ATCC 35021 (0.03%)0.02-5043-50981648510ref|YP_001252773.1|phosphoglyceromutase [Clostridium botulinum A str. ATCC 3502...
1198630Thermoanaerobacter thermohydrosulfuricus WC11 (0.03%)0.03-5044-51181548509ref|WP_004402121.1|2,3-bisphosphoglycerate-independent phosphoglycerate mutase ...






Robetta is available for NON-COMMERCIAL USE ONLY at this time
[ Terms of Service ]
Copyright © 2004-2011 University of Washington