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Job 82012 [SSGCID - ChtrB.00839.a] [2018-03-09] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (EC 1.2.1.12) (NAD-dependent glyceraldehyde-3-phosphate dehydrogenase) - BATCH:82003

Full Structure Predictions  
Model 1

chemical/x-pdb MIME type  PDB file 		Model 2

chemical/x-pdb MIME type  PDB file 		Model 3

chemical/x-pdb MIME type  PDB file 		Model 4

chemical/x-pdb MIME type  PDB file 		Model 5

chemical/x-pdb MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

Images were produced using MolScript and Raster3D!




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Features and Secondary Structure  
  
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MRIVINGFGRIGRLVLRQILKRNSPIEVVAINDLVAGDLLTYLFKYDSTHGSFAPQATFSDGCLVMGERKVHFLAEKDVQKLPWKDLDVDVVVESTGLFVNRDDVAKHLDSGAKRVLITAPAKGDVPTFVMGVNHQQFDPADVIISNASCTTNCLAPLAKVLLDNFGIEEGLMTTVHAATATQSVVDGPSRKDWRGGRGAFQNIIPASTGAAKAVGLCLPELKGKLTGMAFRVPVADVSVVDLTVKLSSATTYEAICEAVKHAANTSMKNIMYYTEEAVVSSDFIGCEYSSVFDAQAGVALNDRFFKLVAWYDNEIGYATRIVDLLEYVQENSK
tmhmm (0) 
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low complexity (0%) 
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coiled-coils (0%) 
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disordered (1%) 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXX
psipred 
-EEEEE---HHHHHHHHHHHH-----EEEEEE----HHHHHHHH------------EEEE--EEEE--EEEEEEE---HHH---HHH---EEEE-------HHHHHHHHH----EEEE---------EEEE---HHH------EEE---HHHHHHHHHHHHHHHH--EEEEEEEEEE--------------------------------HHHHHHHHH-------EEEEEEE-----EEEEEEEEEE-----HHHHHHHHHHHH--------------------------EEEE----EEE---EEEEEEEE---HHHHHHHHHHHHHHHHH--

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    31	    0.125
  max. Y     3	    0.211
  max. S     1	    0.431
  mean S     1-2    0.337
       D     1-2    0.279    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.279 D-cutoff=0.450 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-334     alignment     5c7oO_101     1-335   0.9785   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
1071753Chlamydia trachomatis A/3631 (0.03%)1E-1231-3341-334448100334ref|YP_002889010.1|glyceraldehyde 3-phosphate dehydrogenase [Chlamydia trachoma...
1007870Chlamydia trachomatis RC-L2/551 (0.03%)1E-1251-3341-33445399334ref|YP_001654838.1|glyceraldehyde 3-phosphate dehydrogenase [Chlamydia trachoma...
1100833Chlamydia trachomatis F/SWFPminus1 (0.03%)1E-1251-3341-33445399334ref|YP_005809727.1|glyceraldehyde 3-phosphate dehydrogenase [Chlamydia trachoma...
1218357Chlamydia psittaci M561 (0.03%)1E-1291-3341-33546879335ref|YP_006737019.1|glyceraldehyde-3-phosphate dehydrogenase, type I [Chlamydia ...
1112249Chlamydia psittaci C6/981 (0.03%)1E-1291-3341-33546779335ref|YP_004421976.1|glyceraldehyde-3-phosphate dehydrogenase [Chlamydia psittaci...
1003238Chlamydophila abortus LLG1 (0.03%)1E-1281-3341-33546578335ref|WP_006343783.1|glyceraldehyde-3-phosphate dehydrogenase [Chlamydophila abor...
331635Chlamydophila pecorum E581 (0.03%)1E-1291-3341-33546777335ref|YP_004377122.1|type I glyceraldehyde-3-phosphate dehydrogenase [Chlamydophi...
406984Chlamydophila pneumoniae LPCoLN1 (0.03%)1E-1291-3341-33546875335ref|YP_005661716.1|glyceraldehyde-3-phosphate dehydrogenase, type I [Chlamydoph...
263867Tribolodon brandtii1 (0.03%)2E-59148-3151-16823573168dbj|BAF45327.1|glyceraldehyde 3-phosphate dehydrogenase [Tribolodon brandti...
36080Mucor circinelloides1 (0.03%)4E-69144-3261-18326870183gb|AAL73350.1|glyceraldehyde-3-phosphate dehydrogenase, partial [Mucor cir...
128199Sphagnum fimbriatum7 (0.18%)2E-52111-2601-14921269150emb|CAJ32689.1|glyceraldehyde-3-phosphate dehydrogenase [Sphagnum fimbriatu...
6192Fasciola hepatica1 (0.03%)1E-67147-3331-18726368187gb|AAG23287.1|glyceraldehyde phosphate dehydrogenase [Fasciola hepatica]
180665Mitthyridium sp. Streimann 643991 (0.03%)1E-66111-3011-18926068191gb|AAL74132.1|glyceraldehyde 3-phosphate dehydrogenase [Mitthyridium sp. S...
180646Mitthyridium sp. Streimann 414141 (0.03%)2E-62111-2851-17324568175gb|AAL74087.1|glyceraldehyde 3-phosphate dehydrogenase [Mitthyridium sp. S...
180641Mitthyridium sp. Wall 7391 (0.03%)3E-70111-3081-19627267198gb|AAL74064.1|glyceraldehyde 3-phosphate dehydrogenase [Mitthyridium sp. W...
180615Mitthyridium sp. Wall 36521 (0.03%)1E-69111-3081-19627067198gb|AAL74074.1|glyceraldehyde 3-phosphate dehydrogenase [Mitthyridium sp. W...
180599Mitthyridium sp. Wall 25411 (0.03%)1E-69111-3081-19627067198gb|AAL74066.1|glyceraldehyde 3-phosphate dehydrogenase [Mitthyridium sp. W...
180623Mitthyridium sp. Wall 37271 (0.03%)1E-69111-3081-19627067198gb|AAL74078.1|glyceraldehyde 3-phosphate dehydrogenase [Mitthyridium sp. T...
180636Mitthyridium sp. Wall 38581 (0.03%)1E-69111-3081-19627067198gb|AAL74065.1|glyceraldehyde 3-phosphate dehydrogenase [Mitthyridium sp. W...
171454Syrrhopodon armatus1 (0.03%)2E-69111-3081-19626967198gb|AAL74145.1|glyceraldehyde 3-phosphate dehydrogenase [Syrrhopodon armatu...



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