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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 .
	MLDIRLIRKEPKECESRLQKKDPAISLERLLDLDKTVRQLKADSEALLAKRKVLSGQIHKAKVANENADALIQEVNTIADQLVAFETTLQEQEALLEDLMARLPNYPDEDVPVSPDKTGNQVIKGHGEVPTFPFPPKHHMQLNEALQILDFKLPAKTTGSGWPAYCNEGVLLEWALLTYLLNKQQAHGFQLWLPPLLVKRDILFGSGQIPKFDGQYYRVEDGDQSLFLIPTAEVVLNGFHSQEILNEQDLPLCYAAFTPCFRREAGAGGAHERGLVRVHQFHKVEMFAFTTPEQEEVVYQKMLHVVEEILSELQLPYQLSLLSTGDMSFTAKKTIDAEVWLPGQKAFYEVSSISKCGDFQARRSETRYRDAQGKLHFVNTLNGSGLATPRLLVAILENYQQADGSVVIPSVLRPYMNNQEILLPKTVR
tmhmm (0)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (6%)	-------------------------------------------------------------------------------------XXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (5%)	---------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (7%)	----------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXX
psipred	---HHHHHH-HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------EEEEEE------------HHHHHHH---EEE---HHH------EE--HHHHHHHHHHHHHHHHHHH---EEEE-----HHHHHHHH-----------EEE-----EEEE----HHHHHHH--EEE-HHH--EEE------EE--------HHHHHHHHHHEEEEEEEEE--HHHHHHHHHHHHHHHHHHHHH----EEEEEE-------HHHH---HHHHHHHHHHHHHHHHH-----EE-----EEEE-----EEEEEEE-----HHHHHHHHHHHH-------EEE-HHHHHH----EEE------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    64	    0.119
  max. Y    18	    0.136
  max. S     8	    0.239
  mean S     1-17   0.172
       D     1-17   0.150    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.150 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-428	alignment	1wleA_201	1-465	0.8879	LIGASE

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
1100833	Chlamydia trachomatis F/SWFPminus	1 (0.03%)	1E-137	1-428	1-428	495	100	428	ref|YP_005809962.1|	seryl-tRNA synthetase [Chlamydia trachomatis E/11023] ref|YP...
718219	Chlamydia trachomatis G/9301	1 (0.03%)	1E-137	1-428	1-428	495	100	428	ref|YP_005808112.1|	seryl-tRNA synthetase [Chlamydia trachomatis G/9768] ref|YP_...
1007870	Chlamydia trachomatis RC-L2/55	2 (0.05%)	1E-136	1-428	1-428	492	99	428	ref|YP_001654189.1|	seryl-tRNA synthetase [Chlamydia trachomatis 434/Bu] ref|YP_...
83560	Chlamydia muridarum	1 (0.03%)	1E-138	1-428	1-428	498	90	428	ref|WP_010232695.1|	seryl-tRNA synthetase [Chlamydia muridarum]
1112260	Chlamydia psittaci 02DC24	1 (0.03%)	1E-139	1-425	1-425	502	76	425	ref|YP_004422714.1|	seryl-tRNA synthetase [Chlamydia psittaci 6BC] ref|YP_005663...
406984	Chlamydophila pneumoniae LPCoLN	1 (0.03%)	1E-135	1-425	1-425	489	74	425	ref|YP_005662565.1|	seryl-tRNA synthetase [Chlamydophila pneumoniae LPCoLN] ref|...
29397	Lactobacillus delbrueckii subsp. lactis	1 (0.03%)	1E-37	331-425	1-95	164	52	95	gb|AAQ07213.1|AF496521_1	seryl-tRNA synthetase [Lactobacillus delbrueckii subsp. lact...
282138	Candidatus Protochlamydia amoebophila	1 (0.03%)	1E-134	1-424	1-424	486	51	424	ref|YP_008487.2|	seryl-tRNA synthetase [Candidatus Protochlamydia amoebophila...
432331	Sulfurihydrogenibium yellowstonense SS-5	1 (0.03%)	8E-95	165-416	1-251	354	50	253	ref|WP_007546706.1|	seryl-tRNA synthetase [Sulfurihydrogenibium yellowstonense] ...
159254	Parachlamydia acanthamoebae str. Hall's coccus	1 (0.03%)	1E-142	1-424	9-434	512	49	426	ref|WP_006342161.1|	seryl-tRNA synthetase [Parachlamydia acanthamoebae] gb|EFB40...
716544	Waddlia chondrophila WSU 86-1044	1 (0.03%)	1E-131	1-422	1-422	473	48	422	ref|YP_003709981.1|	Seryl-tRNA synthetase [Waddlia chondrophila WSU 86-1044] ref...
401526	Thermosinus carboxydivorans Nor1	3 (0.08%)	1E-114	128-423	2-296	418	48	298	ref|WP_007290691.1|	seryl-tRNA synthetase, partial [Thermosinus carboxydivorans]...
375063	Haemophilus influenzae 22.4-21	2 (0.05%)	2E-69	241-422	2-184	269	48	183	ref|WP_005672020.1|	seryl-tRNA synthetase [Haemophilus influenzae] gb|EDK13176.1...
886	Thermodesulfobacterium thermophilum	1 (0.03%)	1E-161	1-427	1-429	575	46	431	ref|WP_022855618.1|	seryl-tRNA synthase [Thermodesulfobacterium thermophilum]
795359	Thermodesulfobacterium geofontis OPF15	1 (0.03%)	1E-144	1-426	1-428	518	46	430	ref|YP_004628632.1|	Seryl-tRNA synthetase [Thermodesulfobacterium geofontis OPF1...
90370	Salmonella enterica subsp. enterica serovar Typhi	1 (0.03%)	1E-45	203-342	1-145	190	46	145	gb|ABL01708.1|	unknown, partial [Salmonella enterica subsp. enterica serova...
667014	Thermodesulfatator indicus DSM 15286	1 (0.03%)	1E-164	1-426	1-426	583	45	428	ref|YP_004626948.1|	seryl-tRNA synthetase [Thermodesulfatator indicus DSM 15286]...
1231336	Lactobacillus shenzhenensis LY-73	1 (0.03%)	1E-160	1-427	1-428	571	45	428	ref|WP_022531006.1|	SerS [Lactobacillus shenzhenensis] gb|ERL63718.1| SerS [Lact...
638303	Thermocrinis albus DSM 14484	1 (0.03%)	1E-155	1-421	1-421	553	45	423	ref|YP_003474023.1|	seryl-tRNA synthetase [Thermocrinis albus DSM 14484] ref|WP_...
1007104	Sphingomonas sp. S17	1 (0.03%)	1E-142	1-425	1-425	513	45	429	ref|WP_007403263.1|	seryl-tRNA synthetase [Sphingomonas sp. S17] gb|EGI56743.1| ...