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Job 82020 [SSGCID - ChtrB.17877.a] [2018-03-09] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] Peptidyl-tRNA hydrolase (PTH) (EC 3.1.1.29) - BATCH:82003

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

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Features and Secondary Structure  
 
1   .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    . 
 
MVKLVVGIGNPGRQYVWTRHNIGFLLLDSLASRFLGAFREAPRLYASFAKVEISSEAVVLMKPTTYVNLTGKAVLAAKKFFDVSMEDILVVADDINREFGFVRFRQDCGSGGHNGIKNTTQILQSNHYWQLRLGVGRPSYPGAEGVADYVLSSFSLNEKEKLNDFLEKGIEEILPWLGC
tmhmm (0)
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low complexity (0%)
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coiled-coils (0%)
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disordered (1%)
------------------------------------------------------------------------------------------------------------X----------------------------------------------------------------------
psipred
-EEEEEE-----HHH--------HHHHHHHHHHH-----------EEEEEEEE--EEEEE-------------HHHHHHH----HHHEEEEEEE-------EEEE----------HHHHHHH-----EEEEEEEE--------------------HHHHHHHHHHHHHHHHHHHHHH--

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    38	    0.138
  max. Y    38	    0.190
  max. S    31	    0.529
  mean S     1-37   0.219
       D     1-37   0.206    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.206 D-cutoff=0.450 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-179     alignment     4qt4A_201     1-189   0.9539   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
707183Chlamydia trachomatis E/110231 (0.04%)4E-591-1791-17923299179ref|YP_005810041.1|peptidyl-tRNA hydrolase [Chlamydia trachomatis E/11023] ref|...
907269Chlamydia trachomatis RC-F(s)/3421 (0.04%)4E-591-1791-17923299179ref|YP_008345809.1|peptidyl-tRNA hydrolase [Chlamydia trachomatis RC-F(s)/852] ...
1071782Chlamydia trachomatis L2b/Ams51 (0.04%)1E-581-1791-17923199179ref|YP_001653272.1|peptidyl-tRNA hydrolase [Chlamydia trachomatis L2b/UCH-1/pro...
1100832Chlamydia trachomatis E/C5991 (0.04%)1E-581-1791-17923199179ref|YP_005814634.1|peptidyl-tRNA hydrolase [Chlamydia trachomatis E/150] ref|YP...
813Chlamydia trachomatis1 (0.04%)2E-581-1791-17923099179ref|YP_007736120.1|peptidyl-tRNA hydrolase [Chlamydia trachomatis Ia/SotonIa1] ...
406984Chlamydophila pneumoniae LPCoLN1 (0.04%)6E-501-1761-17620249177ref|YP_005662477.1|peptidyl-tRNA hydrolase [Chlamydophila pneumoniae LPCoLN] re...
81464Anaeromusa acidaminophila1 (0.04%)4E-662-1771-17225644176ref|WP_018702849.1|hypothetical protein [Anaeromusa acidaminophila]
443218Amycolicicoccus subflavus DQS3-9A11 (0.04%)2E-621-1721-17024344172ref|YP_004494728.1|peptidyl-tRNA hydrolase [Amycolicicoccus subflavus DQS3-9A1]...
379896Paenibacillus fonticola1 (0.04%)9E-682-1741-17026142173ref|WP_019640025.1|peptidyl-tRNA hydrolase [Paenibacillus fonticola]
768706Desulfosporosinus orientis DSM 7651 (0.04%)1E-642-1771-17225042176ref|YP_004968333.1|peptidyl-tRNA hydrolase [Desulfosporosinus orientis DSM 765]...
1219013Rhodococcus equi NBRC 101255 = C 71 (0.04%)8E-605-17710-18023542173ref|WP_005514714.1|peptidyl-tRNA hydrolase [Rhodococcus equi] gb|EGD22488.1| am...
685727Rhodococcus equi 103S1 (0.04%)1E-595-17710-18023442173ref|YP_004006023.1|aminoacyl-tRNA hydrolase pth [Rhodococcus equi 103S] ref|WP_...
46469Orenia marismortui1 (0.04%)8E-692-1781-17326541177ref|WP_018248276.1|hypothetical protein [Orenia marismortui]
138119Desulfitobacterium hafniense Y511 (0.04%)5E-682-17612-18226241175ref|YP_516412.1|peptidyl-tRNA hydrolase [Desulfitobacterium hafniense Y51] r...
1278076Rhodococcus ruber BKS 20-381 (0.04%)1E-674-1777-17826141174ref|WP_003937848.1|peptidyl-tRNA hydrolase [Rhodococcus ruber] gb|EME61900.1| p...
871963Desulfitobacterium dichloroeliminans LMG P-214391 (0.04%)9E-682-1761-17126141175ref|YP_007219027.1|peptidyl-tRNA hydrolase [Desulfitobacterium dichloroeliminan...
49338Desulfitobacterium hafniense1 (0.04%)9E-682-17612-18226141175ref|WP_018211848.1|peptidyl-tRNA hydrolase [Desulfitobacterium hafniense]
537010Desulfitobacterium hafniense DP71 (0.04%)1E-672-1761-17126041175ref|YP_002456624.1|peptidyl-tRNA hydrolase [Desulfitobacterium hafniense DCB-2]...
756499Desulfitobacterium dehalogenans ATCC 515071 (0.04%)4E-672-1761-17125941175ref|YP_006428383.1|peptidyl-tRNA hydrolase [Desulfitobacterium dehalogenans ATC...
686340Methylomicrobium album BG81 (0.04%)1E-651-1771-17525441177ref|WP_005374001.1|peptidyl-tRNA hydrolase [Methylomicrobium album] gb|EIC30996...






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