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Job 85030 [SSGCID - NegoA.00145.a] [2018-08-01] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] aspartyl-tRNA synthetase - BATCH:85027

Full Structure Predictions  
Model 1

chemical/x-pdb MIME type  PDB file 		Model 2

chemical/x-pdb MIME type  PDB file 		Model 3

chemical/x-pdb MIME type  PDB file 		Model 4

chemical/x-pdb MIME type  PDB file 		Model 5

chemical/x-pdb MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

Images were produced using MolScript and Raster3D!




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Features and Secondary Structure  
  
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MRTNYCGLISEQYLGQTVTVKGWVHRRRDHGGVIFIDLRDREGIVQVVIDPDTPEAFAAADSARNEYVLGITGRVRNRPEGTTNDKMISGKIEILAKEIEVLNAAATPPFQIDDENISENVRLTNRVIDLRRPVMQRNLRLRYQVATGVRRYLDAQGFIDIETPMLTRSTPEGARDYLVPSRVHPGEFFALPQSPQLFKQLLMVAGFDRYYQITKCFRDEDLRADRQPEFTQIDLETSFLNEDEIMDITEGMAKQVFKDALNVDLGDFPRMPYSEAMFYYGSDKPDMRINLKFTELTDLMKTEEFKVFRGAADMKGGRVVALRVPNGAKFSRKEIDEYTKFVGIYGAKGLAYIKVNDAGNLSNGEDSGLQSPIVKFLSENALKEIIERTAAQNGDIIFFGADKAKVVNEAVGALRIKVGLEHGKDNGYFTDEWKPLWVVDFPMFEYDEEADRYVAVHHPFTAPKEGHEDLMVSDPANCLARAYDMVLNGWEIGGGSIRIHRADVQEKVFAALKISPEEQQEKFGFLLDNLKFGAPPHGGLAFGLDRLVTLMTGAESIRDVIAFPKTQRAQCLLTDAPNSVDDKQLRELSLRLRQKAVETKEA
tmhmm (0) 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%) 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%) 
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (3%) 
X-------------------------------------------------------------------------------XXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXX
psipred 
----HHHH--HHH---EEEEEEEEE--------EEEEEE----EEEEEE----HHHHHHHH------EEEEEEEEEE--------------EEEEEEEEEEEE---------------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---EE-----------------EEEEE-------------HHHHHHHHHH----EEEEEEE-------------EEEEEEEE----HHHHHHHHHHHHHHHHHHH-------------HHHHH-----EEEEE----HHHHHHHH------HHH--------EEEEEE----------HHHHHHHHHHHH-------EEE-----------------HH----HHHHHHHH---------EEEE-----HHHHHHHHHHHHHHHHHHHHH-----------EEE-------------------EEEE-----HHHHH----HH---EEEEEE--EEEEEEEE----HHHHHHHHHHH----HHHHHHHHHHHHHHH--------EEE-HHHHHHHH-----HHEEEE-------------------HHHHHH--EEEE---------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    59	    0.155
  max. Y    23	    0.134
  max. S    22	    0.190
  mean S     1-22   0.113
       D     1-22   0.126    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.126 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-602     alignment     1eqrA_301     1-590   0.8969   LIGASE


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
528355Neisseria gonorrhoeae PID11 (0.03%)0.01-6021-602854100602ref|YP_008503180.1|aspartyl-tRNA synthetase [Neisseria gonorrhoeae MS11] ref|WP...
528359Neisseria gonorrhoeae SK-92-6791 (0.03%)0.01-6021-602854100602ref|WP_003701602.1|aspartyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EEZ57559...
521006Neisseria gonorrhoeae NCCP119452 (0.05%)0.01-6021-602853100602ref|YP_002002386.1|aspartyl-tRNA synthetase [Neisseria gonorrhoeae NCCP11945] r...
528360Neisseria gonorrhoeae SK-93-10351 (0.03%)0.01-6021-602852100602ref|WP_003697407.1|aspartyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EEZ50732...
940296Neisseria gonorrhoeae TCDC-NG081071 (0.03%)0.01-6021-602852100602ref|YP_005890210.1|aspartyl-tRNA synthetase [Neisseria gonorrhoeae TCDC-NG08107...
528351Neisseria gonorrhoeae F621 (0.03%)0.01-6021-602851100602ref|WP_003705735.1|aspartyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EFF40100...
528348Neisseria gonorrhoeae DGI21 (0.03%)0.01-6021-602850100602ref|WP_003693621.1|aspartyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EEZ46098...
1190578Neisseria meningitidis NM5181 (0.03%)0.01-6021-60285598602ref|WP_002245168.1|aspartate--tRNA ligase [Neisseria meningitidis] gb|ELK58027....
1145176Neisseria meningitidis 20074611 (0.03%)0.01-6021-60285598602ref|WP_002235145.1|aspartyl-tRNA synthetase [Neisseria meningitidis] emb|CBA061...
1145153Neisseria meningitidis NM951 (0.03%)0.01-6021-60285598602ref|YP_005901142.1|aspartyl-tRNA synthetase [Neisseria meningitidis M01-240355]...
546268Neisseria subflava NJ97031 (0.03%)0.01-6021-60285598602ref|WP_004518826.1|aspartyl-tRNA synthetase [Neisseria subflava] gb|EFC53062.1|...
374833Neisseria meningitidis 0534422 (0.05%)0.01-6021-60285598602ref|YP_001599780.1|aspartyl-tRNA synthetase [Neisseria meningitidis 053442] ref...
1145159Neisseria meningitidis 818581 (0.03%)0.01-6021-60285598602ref|WP_002256416.1|aspartate--tRNA ligase [Neisseria meningitidis] gb|EOC16723....
1069622Neisseria meningitidis NM30011 (0.03%)0.01-6021-60285598602ref|WP_002243319.1|aspartyl-tRNA synthetase [Neisseria meningitidis] gb|EJU7977...
1069615Neisseria meningitidis NM5761 (0.03%)0.01-6021-60285498602ref|WP_002236076.1|aspartyl-tRNA synthetase [Neisseria meningitidis] gb|EJU5780...
1145144Neisseria meningitidis NM6071 (0.03%)0.01-6021-60285498602ref|YP_002343282.1|aspartyl-tRNA synthetase [Neisseria meningitidis Z2491] ref|...
489653Neisseria lactamica 020-061 (0.03%)0.01-6021-60285498602ref|YP_004048133.1|aspartyl-tRNA synthetase [Neisseria lactamica 020-06] ref|WP...
604162Neisseria meningitidis 80131 (0.03%)0.01-6021-60285498602ref|YP_005878031.1|aspartyl-tRNA synthetase (aspartate--tRNA ligase; AspRS) [Ne...
546267Neisseria polysaccharea ATCC 437681 (0.03%)0.01-6021-60285498602ref|WP_003754255.1|aspartyl-tRNA synthetase [Neisseria polysaccharea] gb|EFH219...
1145177Neisseria meningitidis NM1341 (0.03%)0.01-6021-60285498602ref|YP_005894480.1|aspartyl-tRNA synthetase [Neisseria meningitidis G2136] ref|...



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