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Job 85041 [SSGCID - NegoA.01032.a] [2018-08-01] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] tyrosyl-tRNA synthetase - BATCH:85027

Full Structure Predictions  
Model 1

chemical/x-pdb MIME type  PDB file 		Model 2

chemical/x-pdb MIME type  PDB file 		Model 3

chemical/x-pdb MIME type  PDB file 		Model 4

chemical/x-pdb MIME type  PDB file 		Model 5

chemical/x-pdb MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

Images were produced using MolScript and Raster3D!




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Features and Secondary Structure  
  
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MSVIQDLQSRGLIAQTTDIEALDALLNEQKIALYCGFDPTADSLHIGHLLPVLALRRFQQAGHTPIALVGGATGMIGDPSFKAAERSLNSAETVAGWVGSIRSQLTPFLSFEGGNAAIMANNADWFGSMNCLDFLRDIGKHFSVNAMLNKESVKQRIDRDGAGISFTEFAYSLLQGYDFAELNKRHGAVLEIGGSDQWGNITAGIDLTRRLNQKQVFGLTLPLVTKSDGTKFGKTEGGAVWLNAKKTSPYQFYQFWLKVADADVYKFLKYFTFLSIEEIGVVEAKDKASGSKPEAQRILAEEMTRLIHGEEALAAAQRISESLFAEDQSRLTESDFEQLALDGLPAFEVSDGINAVEALVKTGLAASNKEARGFVNAKAVLLNGKPAEANNPNHAAERPDDAYLLIGEYKRFGKYTILRRGKRNHALLVWK
tmhmm (0) 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (3%) 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX----------------------------------
coiled-coils (0%) 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (6%) 
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXX------------------------------------------------------------------XXXXXXXXXXX---------------------------------------------------------
psipred 
--HHHHHHH---EEEE--HHHHHHHHH----EEEEEE------HHHHHHHHHHHHHHHHHH---EEEEE--HHHHH--------------HHHHHHHHHHHHHHHH----------EEEE-HHHHHHH--HHHHHHHHHHH--HHHHHHHHHHHHHHH------EEEHHHHHHHHHHHHHHHHHH--EEEEE---HHHHHHHHHHHHHHHHH---EEEEEE--EE--------------EEE------HHHHHHHH----HHHHHHHHHHHH---HHHHHHHHHHH-----HHHHHHHHHHHHHHH---HHHHHHHHHHHHHH---------HHHHHHHHH-----EEE-----HHHHHHH------HHHHHHHHH---EEE--EEE-------------------HHHEE---EEEEEE---EEEEEEE-

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    22	    0.143
  max. Y    22	    0.121
  max. S    59	    0.150
  mean S     1-21   0.087
       D     1-21   0.108    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.108 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-431     alignment     4oudA_201     1-412   0.9209   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
940296Neisseria gonorrhoeae TCDC-NG081071 (0.03%)1E-1691-4311-431599100431ref|YP_005888888.1|putative tyrosyl-tRNA synthase [Neisseria gonorrhoeae TCDC-N...
528351Neisseria gonorrhoeae F621 (0.03%)1E-1681-4311-431599100431ref|YP_207242.1|tyrosyl-tRNA synthase [Neisseria gonorrhoeae FA 1090] ref|YP...
528355Neisseria gonorrhoeae PID11 (0.03%)1E-1691-4311-43160299431ref|WP_003692509.1|tyrosyl-tRNA synthetase [Neisseria gonorrhoeae] gb|EEZ44907....
1190578Neisseria meningitidis NM5181 (0.03%)1E-1711-4311-43160897431ref|WP_002219813.1|tyrosyl-tRNA synthetase [Neisseria meningitidis] gb|EGC52400...
1145195Neisseria meningitidis NM32232 (0.05%)1E-1711-4311-43160897431ref|WP_002229893.1|tyrosyl-tRNA synthetase [Neisseria meningitidis] gb|EHP14676...
1190579Neisseria meningitidis NM31731 (0.03%)1E-1711-4311-43160897431ref|NP_274832.1|tyrosyl-tRNA synthetase [Neisseria meningitidis MC58] ref|YP...
1095700Neisseria meningitidis 872551 (0.03%)1E-1711-4311-43160897431ref|YP_005893290.1|tyrosyl-tRNA synthetase [Neisseria meningitidis G2136] ref|W...
1145181Neisseria meningitidis 20030511 (0.03%)1E-1711-4311-43160897431ref|WP_002259746.1|tyrosine--tRNA ligase [Neisseria meningitidis] gb|EOC51737.1...
1190581Neisseria meningitidis NM28661 (0.03%)1E-1711-4311-43160797431ref|YP_974492.1|tyrosyl-tRNA synthetase [Neisseria meningitidis FAM18] ref|Y...
1145174Neisseria meningitidis 20050401 (0.03%)1E-1711-4311-43160797431ref|WP_002248344.1|tyrosine--tRNA ligase [Neisseria meningitidis] gb|ELK87865.1...
1069608Neisseria meningitidis 930031 (0.03%)1E-1711-4311-43160797431ref|WP_002233016.1|tyrosyl-tRNA synthetase [Neisseria meningitidis] gb|EJU51077...
1145178Neisseria meningitidis 980021 (0.03%)1E-1711-4311-43160797431ref|WP_002245693.1|tyrosine--tRNA ligase [Neisseria meningitidis] gb|ELK63898.1...
1069620Neisseria meningitidis NM27951 (0.03%)1E-1711-4311-43160797431ref|WP_002217938.1|tyrosyl-tRNA synthetase [Neisseria meningitidis] emb|CBA0929...
1145176Neisseria meningitidis 20074611 (0.03%)1E-1711-4311-43160797431ref|WP_002258695.1|tyrosine--tRNA ligase [Neisseria meningitidis] gb|EOC32385.1...
487Neisseria meningitidis1 (0.03%)1E-1711-4311-43160697431ref|WP_019742725.1|tyrosyl-tRNA synthetase [Neisseria meningitidis]
1069609Neisseria meningitidis 930041 (0.03%)1E-1711-4311-43160697431ref|WP_002234288.1|tyrosyl-tRNA synthetase [Neisseria meningitidis] gb|EJU51485...
1095699Neisseria meningitidis 980801 (0.03%)1E-1701-4311-43160697431ref|WP_002245192.1|tyrosine--tRNA ligase [Neisseria meningitidis] gb|ELK57639.1...
869214Neisseria lactamica Y92-10091 (0.03%)1E-1701-4311-43160497431ref|WP_003714544.1|tyrosyl-tRNA synthetase [Neisseria lactamica] emb|CBX23064.1...
1069622Neisseria meningitidis NM30011 (0.03%)1E-1701-4311-43160497431ref|WP_002243831.1|tyrosyl-tRNA synthetase [Neisseria meningitidis] gb|EJU77230...
1069619Neisseria meningitidis NM26571 (0.03%)1E-1701-4311-43160497431ref|WP_002240756.1|tyrosyl-tRNA synthetase [Neisseria meningitidis] gb|EJU71508...



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