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Job 85042 [SSGCID - NegoA.01161.a] [2018-08-01] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] pyruvate kinase - BATCH:85027

Full Structure Predictions  
Model 1

chemical/x-pdb MIME type  PDB file 		Model 2

chemical/x-pdb MIME type  PDB file 		Model 3

chemical/x-pdb MIME type  PDB file 		Model 4

chemical/x-pdb MIME type  PDB file 		Model 5

chemical/x-pdb MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

Images were produced using MolScript and Raster3D!




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Features and Secondary Structure  
  
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MNQTSRDLTRISHNTKIVATLGPGSNNVELLEDMIRVGGLNVVRFNFSHGTPEFHQENARIVREAAKRAGQEIAIIADLQGPKIRVGKIAGGGIELNKGETLVLDAALEGEGTREAVGLDYRDLPDDVAAGDVLWLDDGLLTLTVESVEGSRIITRVENSHILKSNKGINKRGGGLSAGALTEKDFRDLKTAIAIGCDYLAISFVKSAEDLHIARAKVEEEMKGSTAVRPGLVSKIERVEAIENLDEIILAGDGIMVARGDLAVEVGHAAVPALQKRMIRRARELRRFSITATQMMESMITNPVPTRAEVSDVANAVLDGTDAVMCSAETAVGAYPFETVSQMAIICAAAEKEQDSLNGVAEQTEYPEAVSTNLAIAGGAVSVARAVHAKAIVALTESGSTAFEISRHNITLPIFALTPSVSAQRRMAMYRGVRPLILATSTDHDTALNEVETMLVEHNILHSGDQYIITSGSQMRESGSTNTLEVLRVK
tmhmm (0) 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%) 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%) 
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (6%) 
XXXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------------------------------------------------------
psipred 
---------------EEEEE-------HHHHHHHHHH----EEEEE-----HHHHHHHHHHHHHHHHH---EEEEEE------EEEEE-----EE-----EEEEEE--------------HHHHHHH-----EEEE----EEEEEEEEEEE--EEEEE---EE-------------------HHHHHHHHHHHHHH--EEEE-----HHHHHHHHHHHHHHH-------EEEEEEE--HHHHH-HHHHH----EEEEE---------HHHHHHHHHHHHHHHHHH--EEEE-HHHHHHHHH--------HHHHHHHHHH---EEEE------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH----EEEEE---HHHHHHHHHH-----EEEEE--HHHHHHHHHH--EEEE-------HHHHHHHHHHHHHHH-------EEEEEE----------EEEEEEEE-

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    56	    0.147
  max. Y    13	    0.184
  max. S     6	    0.431
  mean S     1-12   0.344
       D     1-12   0.246    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.246 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-490     alignment     6gg4A_204     1-510   0.8078   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
528360Neisseria gonorrhoeae SK-93-10351 (0.03%)1E-1661-4901-490590100490ref|WP_003703307.1|hypothetical protein [Neisseria gonorrhoeae] gb|EEZ60244.1| ...
940296Neisseria gonorrhoeae TCDC-NG081071 (0.03%)1E-1651-4901-490589100490ref|YP_208914.1|PykA [Neisseria gonorrhoeae FA 1090] ref|YP_002003003.1| Pyk...
528359Neisseria gonorrhoeae SK-92-6791 (0.03%)1E-1651-4901-490588100490ref|WP_003700722.1|hypothetical protein [Neisseria gonorrhoeae] gb|EEZ55880.1| ...
1145159Neisseria meningitidis 818581 (0.03%)1E-1651-4901-49058999490ref|WP_002256923.1|pyruvate kinase [Neisseria meningitidis] gb|EOC13142.1| pyru...
1145134Neisseria meningitidis 970271 (0.03%)1E-1651-4901-49058999490ref|YP_003084075.1|Pyruvate kinase [Neisseria meningitidis alpha14] ref|WP_0022...
1190569Neisseria meningitidis 960371 (0.03%)1E-1651-4901-49058999490ref|YP_005900786.1|pyruvate kinase [Neisseria meningitidis M01-240355] ref|WP_0...
1145195Neisseria meningitidis NM32231 (0.03%)1E-1651-4901-49058899490ref|YP_001598274.1|pyruvate kinase [Neisseria meningitidis 053442] ref|YP_00589...
1145176Neisseria meningitidis 20074611 (0.03%)1E-1651-4901-49058899490ref|WP_002258425.1|pyruvate kinase [Neisseria meningitidis] emb|CCA43643.1| pyr...
1190581Neisseria meningitidis NM28661 (0.03%)1E-1651-4901-49058899490ref|YP_005881762.1|pyruvate kinase [Neisseria meningitidis alpha710] ref|YP_005...
1095678Neisseria meningitidis 630491 (0.03%)1E-1651-4901-49058899490ref|WP_002249209.1|pyruvate kinase [Neisseria meningitidis] gb|ELL05607.1| pyru...
1145157Neisseria meningitidis 736961 (0.03%)1E-1651-4901-49058899490ref|YP_005896884.1|pyruvate kinase [Neisseria meningitidis M04-240196] ref|WP_0...
1145177Neisseria meningitidis NM1341 (0.03%)1E-1651-4901-49058899490ref|YP_004047682.1|pyruvate kinase [Neisseria lactamica 020-06] ref|WP_00221620...
1069609Neisseria meningitidis 930041 (0.03%)1E-1651-4901-49058899490ref|WP_002233387.1|hypothetical protein [Neisseria meningitidis] gb|EJU57336.1|...
1190579Neisseria meningitidis NM31731 (0.03%)1E-1651-4901-49058799490ref|NP_273151.1|pyruvate kinase [Neisseria meningitidis MC58] ref|YP_0058776...
1069619Neisseria meningitidis NM26571 (0.03%)1E-1651-4901-49058799490ref|WP_002240194.1|hypothetical protein [Neisseria meningitidis] emb|CBA09130.1...
1145149Neisseria meningitidis NM361 (0.03%)1E-1651-4901-49058799490ref|YP_974212.1|pyruvate kinase [Neisseria meningitidis FAM18] ref|WP_002220...
1145174Neisseria meningitidis 20050401 (0.03%)1E-1651-4901-49058799490ref|WP_002248206.1|pyruvate kinase [Neisseria meningitidis] gb|ELK92854.1| pyru...
1095665Neisseria meningitidis 630061 (0.03%)1E-1641-4901-49058599490ref|WP_002251784.1|pyruvate kinase [Neisseria meningitidis] gb|ELL33283.1| pyru...
1069616Neisseria meningitidis 980081 (0.03%)1E-1651-4901-49058798490ref|YP_005893016.1|pyruvate kinase [Neisseria meningitidis G2136] ref|WP_002237...
1095700Neisseria meningitidis 872551 (0.03%)1E-1641-4901-49058698490ref|WP_002225932.1|hypothetical protein [Neisseria meningitidis] gb|EGC65647.1|...



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