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Job 88291 [SSGCID - MygeA.17945.a] [2019-01-18] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete] 30S ribosomal protein S3 (MG_157) - BATCH:88256

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

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Features and Secondary Structure  
 
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MGQKVNSNGLRFGINKNWISRWTASSNQQTATWLVQDEKIRNLFFINYRNAQVSNVEIERTQTTVDVYVYAAQPALLIGSENKNIQKITKMIQIIVGRKIKLDLTINEIGSPMLSSRIIARDIANAIENRVPLRSAMRQALTKVLKAGANGIKVLVSGRLNGAEIARDKMYIEGNMPLSTLRADIDYAFEKAKTTYGIIGVKVWINRGMIYAKGLNRTPAHILHPQKKQLKTPTIKKTNSVIAKQKLTGSDIETASLKALTDNNQNHE
tmhmm (0)
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low complexity (0%)
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coiled-coils (0%)
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disordered (22%)
XX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
psipred
---------EE---------EEE---HHHHHHHHHHHHHHHHHHHHH------EEEEEEE-HHHHHHHHHHH--HHH------HHHHHHHHHHHH-----EEEEEEEEEE---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----EEEEEE----------EEEEE-------------EEEEEEEEE---EEEEEEEEEE--------------------------------------------------------------

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    25	    0.148
  max. Y    25	    0.172
  max. S    23	    0.268
  mean S     1-24   0.205
       D     1-24   0.185    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.185 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
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Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-268     alignment     6az1C_202     1-211   0.7450   --


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
414073Codium sp. DB20061 (0.03%)2E-4176-2061-31535831gb|ABL11104.1|ribosomal protein S3 [Codium sp. DB2006]
414146Codium taylorii1 (0.03%)1E-10166-2061-41735641gb|ABL11072.1|ribosomal protein S3 [Codium taylorii] gb|ABL11074.1| riboso...
414078Codium sp. DML309291 (0.03%)2E-10166-2061-41735641gb|ABL11040.1|ribosomal protein S3 [Codium ovale] gb|ABL11050.1| ribosomal...
414087Codium sp. HV10681 (0.03%)3E-10166-2061-41725641gb|ABL11046.1|ribosomal protein S3 [Codium platylobium] gb|ABL11100.1| rib...
414121Codium bursa1 (0.03%)3E-10166-2061-41725641gb|ABL10916.1|ribosomal protein S3 [Codium bursa] gb|ABL10918.1| ribosomal...
414131Codium geppiorum2 (0.06%)3E-10166-2061-41725641gb|ABL10990.1|ribosomal protein S3 [Codium geppiorum]
414071Codium cf. minus DHO2-1881 (0.03%)8E-10166-2061-41715641gb|ABL11034.1|ribosomal protein S3 [Codium cf. minus DHO-015] gb|ABL11036....
414076Codium sp. DHO2-1961 (0.03%)4E-10166-2061-41715641gb|ABL10986.1|ribosomal protein S3 [Codium geppiorum] gb|ABL11006.1| ribos...
414058Codium cf. latum ASH-0181 (0.03%)1E-9166-2061-41705641gb|ABL10962.1|ribosomal protein S3 [Codium cf. flabellatum DHO-009] gb|ABL...
414080Codium sp. DML402181 (0.03%)1E-9166-2061-41705641gb|ABL11092.1|ribosomal protein S3 [Codium sp. DML40218]
414137Codium muelleri1 (0.03%)2E-9166-2061-41705641gb|ABL11038.1|ribosomal protein S3 [Codium muelleri]
414072Codium cf. tenue HV6081 (0.03%)1E-9166-2061-41705641gb|ABL11080.1|ribosomal protein S3 [Codium cf. tenue HV608]
414077Codium sp. DHO2-3481 (0.03%)1E-8166-2061-41675641gb|ABL11106.1|ribosomal protein S3 [Codium sp. DHO2-348]
414053Codium cf. bursa DHO2-1761 (0.03%)2E-8166-2061-41665641gb|ABL10920.1|ribosomal protein S3 [Codium cf. bursa DHO2-176]
414140Codium platyclados1 (0.03%)5E-10166-2061-41715441gb|ABL11044.1|ribosomal protein S3 [Codium platyclados]
414057Codium cf. fragile AU51 (0.03%)8E-10166-2061-41715441gb|ABL10976.1|ribosomal protein S3 [Codium cf. fragile AU5]
414081Codium sp. DML402271 (0.03%)1E-9166-2061-41705441gb|ABL11088.1|ribosomal protein S3 [Codium sp. DML40227]
414132Codium gracile1 (0.03%)2E-9166-2061-41705441gb|ABL10992.1|ribosomal protein S3 [Codium gracile]
221043Codium dimorphum1 (0.03%)6E-9166-2061-41685441gb|ABL10944.1|ribosomal protein S3 [Codium dimorphum]
221051Codium spongiosum1 (0.03%)7E-9166-2061-41685441gb|ABL11064.1|ribosomal protein S3 [Codium spongiosum]






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