old.robetta.org

A new Robetta server is available for structure prediction.

     
Fragment Libraries    Alanine Scanning    DNA Interface Scan
[ Queue ] [ Submit ]    [ Queue ] [ Submit ]    [ Queue ] [ Submit ]
[ Register / Update ] [ Docs / FAQs ] [ Login ]


     
Job 88574 [SSGCID - TrbrB.18710.a] [2019-01-30] [D-172-16-30-137.dhcp4.x.x] [Structure] [Complete]

Full Structure Predictions  
Model 1

 chemical/x-pdb  MIME type  PDB file
Model 2

 chemical/x-pdb  MIME type  PDB file
Model 3

 chemical/x-pdb  MIME type  PDB file
Model 4

 chemical/x-pdb  MIME type  PDB file
Model 5

 chemical/x-pdb  MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

Images were produced using MolScript and Raster3D!




Plots powered by Plotly.js.

Features and Secondary Structure  
 
1   .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340 
 
MLNICQNLSSVAKPDLIVVSGHKCNIQRGPQTSIGTPTITKRVTAWEALIYLEMLLAEDEAFAILATFVPPLVALLPPENFASDNWVYVHDPASRPLLKSIFAQLKQMSADTHGYNEVMDTTRWEIILVDVTATFHKPCVLDIKLGYVRHSPHTLPDKVERIHKRQLRRSQPIRFCGAHHQFCRQNNDIGECFELEEFTKDMGYALETEESHRRALRSFFTTASLMTTSNTNETTIIDDRHAMARSRCCRQRVQKLVDFLKGHLGQMLLERIAFVSASLLIVYDATGCCGRNVTVSEGINSMNDMVNVYLIDFSRSGDRRLHFPEEVVGFVQGLEKIIFLLS
tmhmm (0)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (19%)
XX--XXXXXXXXX-------------------------------------------------------------------------------------------XXXXXXXXXXXXX----------------------------------XXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXX-------------------------------------
psipred
--HHHHH---------EEE---HHHHH----------EEE----HHHHHHHHHHHH----HHHH-------EEEE--HHH------EEE--------HHHHHHHH-----------------EEEEEEHHHH------EEEEEEE----------HHHHHHHHHHHH-----EEEE--EEEEE---------EEEEE--HHH-EE---HHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH---EEE--EEEEE-----------------------EEEE-----------------HHHHHHHHHHHHHH-

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    46	    0.141
  max. Y    13	    0.188
  max. S    11	    0.393
  mean S     1-12   0.339
       D     1-12   0.247    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.247 D-cutoff=0.450 Networks=SignalP-TM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------


Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-342     alignment     2aqxA_202     1-289   0.5295   TRANSFERASE


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
999953Trypanosoma brucei brucei strain 927/4 GUTat10.12 (0.12%)1E-1011-3421-342375100342ref|XP_827490.1|hypothetical protein [Trypanosoma brucei brucei strain 927/4...
679716Trypanosoma brucei gambiense DAL9722 (0.12%)1E-1011-3421-34237699342emb|CBH14688.1|hypothetical protein, conserved [Trypanosoma brucei gambiens...
1068625Trypanosoma congolense IL30003 (0.18%)4E-781-3411-34029847348emb|CCD15714.1|unnamed protein product [Trypanosoma congolense IL3000]
5693Trypanosoma cruzi4 (0.24%)2E-895-3424-33433646338gb|EKG03133.1|hypothetical protein TCSYLVIO_005831 [Trypanosoma cruzi]
0UNIDENTIFIED58 (3.44%)4E-895-3424-33433445338gb|ESS71139.1|hypothetical protein TCDM_00180 [Trypanosoma cruzi Dm28c]
85056Trypanosoma cruzi marinkellei2 (0.12%)9E-875-34261-39132644338gb|EKF31703.1|hypothetical protein MOQ_004458 [Trypanosoma cruzi marinkell...
1055687Trypanosoma vivax Y4862 (0.12%)1E-834-34149-37631642338emb|CCC50776.1|conserved hypothetical protein [Trypanosoma vivax Y486]
420245Leishmania braziliensis MHOM/BR/75/M29042 (0.12%)4E-828-3421-37531130389ref|XP_001568411.1|conserved hypothetical protein [Leishmania braziliensis MHOM...
929439Leishmania mexicana MHOM/GT/2001/U11032 (0.12%)6E-818-3421-37530730389ref|XP_003879310.1|conserved hypothetical protein [Leishmania mexicana MHOM/GT/...
435258Leishmania infantum JPCM52 (0.12%)4E-818-3421-37530829389ref|XP_001469124.1|conserved hypothetical protein [Leishmania infantum JPCM5] e...
5661Leishmania donovani2 (0.12%)5E-818-3421-37530729389ref|XP_003864898.1|hypothetical protein, conserved [Leishmania donovani] emb|CB...
347515Leishmania major strain Friedlin2 (0.12%)8E-818-3421-37530729389ref|XP_003722708.1|conserved hypothetical protein [Leishmania major strain Frie...
134013Phytomonas sp. isolate Hart11 (0.06%)5E-6718-3428-36626128374emb|CCW69486.1|unnamed protein product [Phytomonas sp. isolate Hart1]
134006Phytomonas sp. isolate EM11 (0.06%)6E-6719-3428-36626128374emb|CCW62150.1|unnamed protein product [Phytomonas sp. isolate EM1]
28005Strigomonas culicis2 (0.12%)2E-6720-3419-40726226408gb|EPY25695.1|hypothetical protein STCU_06548 [Strigomonas culicis]
59799Angomonas deanei3 (0.18%)2E-5519-3348-36222226372gb|EPY38664.1|hypothetical protein AGDE_05265 [Angomonas deanei]
99883Tetraodon nigroviridis8 (0.47%)3E-58125-342204-39523223226emb|CAG06789.1|unnamed protein product [Tetraodon nigroviridis]
914234Ceriporiopsis subvermispora B3 (0.18%)2E-5210-3412-31921223351gb|EMD34281.1|hypothetical protein CERSUDRAFT_117162 [Ceriporiopsis subver...
1124627Dekkera bruxellensis AWRI14991 (0.06%)3E-1279-16562-147792387gb|EIF46374.1|inositol hexaphosphate kinase [Dekkera bruxellensis AWRI1499...
7739Branchiostoma floridae4 (0.24%)2E-51130-341239-42920922223ref|XP_002600752.1|hypothetical protein BRAFLDRAFT_123507 [Branchiostoma florid...






Robetta is available for NON-COMMERCIAL USE ONLY at this time
[ Terms of Service ]
Copyright © 2004-2011 University of Washington