old.robetta.org

Click the icons below each image to download the prediction in PDB format ( )

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470
	MGLDIQLFRDPEMADIVRESERRRYARPEIVDDIIEIDKRWRRTQFLTEASKKMINTCSKAVGAKKKAKEADGDVSEVPADVMSAAREGTLDTEKLESLCILQLKQLSKALATQVESLAKLAAEQEAERDRMVISVGNVLHESVPVSNDEETGNVVVRTFGDVTRRLKMTHVDCMERLGLMDTSKAVTAMAGGRAFVLRGGLVQLQFALISYALNFLIARGYEPFYPPFFLNKEYMGAVAQLSDFDESLYKVSGDGDEKYLIATSEAPIAAYHTNKWFTEMKEPIKYAGVSSCFRKEAGAHGRDTLGIFRVHQFDKLEQFVVCSPREDQSWKMLEEMIQTSQDFNESLGLPYRVINICSGALNNAAAKKYDLEAWFPGSGAFRELVSCSNCTDYQARSVNCRFGPNTKGSTANSTKEYCHMLNGTLCAVTRTMCCICENYQTEEGILIPEVLRPFMMGTEMLKFPAEAPTADKE
tmhmm (0)	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (3%)	-----------------------------------------------------------XXXXXXXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (4%)	-------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (8%)	------------------------------------------------------X-XXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXX-XX------------------------------------------------XXXXXXXXXX
psipred	----HHHHH----HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------EEEEEE-----------HHHHHHH-----HHHHHHH-----------HHHHHHHHHHHHHHHHHHH---EEEE-----HHHHHHH--------HH-----------EE-------HHHHH--EEE-HHH--EEEE----EE-----------HHHHHHEEEEHHHHHEE----HHHHHHHHHHHHHHHHHHHHH----EEEEE---------HH----HHHHHHHH--EEE---------HH------EE-------------EEEEEE--------HHHHHHHHH------EE--HHH-------EEE------------

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    25	    0.111
  max. Y    36	    0.109
  max. S    23	    0.119
  mean S     1-35   0.103
       D     1-35   0.106    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.106 D-cutoff=0.450 Networks=SignalP-noTM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-474	alignment	4rqeA_203	1-461	0.7943	--

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
5661	Leishmania donovani	1 (0.03%)	1E-161	1-474	1-474	574	100	474	ref|XP_003858988.1|	seryl-tRNA synthetase, putative [Leishmania donovani] emb|CB...
435258	Leishmania infantum JPCM5	2 (0.05%)	1E-160	1-474	1-474	572	100	474	ref|XP_001463813.1|	putative seryl-tRNA synthetase [Leishmania infantum JPCM5] e...
347515	Leishmania major strain Friedlin	1 (0.03%)	1E-156	1-474	1-474	557	98	474	ref|XP_001681478.1|	putative seryl-tRNA synthetase [Leishmania major strain Frie...
929439	Leishmania mexicana MHOM/GT/2001/U1103	1 (0.03%)	1E-157	1-474	1-474	561	97	474	ref|XP_003872983.1|	putative seryl-tRNA synthetase [Leishmania mexicana MHOM/GT/...
420245	Leishmania braziliensis MHOM/BR/75/M2904	2 (0.05%)	1E-155	1-473	1-473	556	95	473	ref|XP_001564118.1|	putative seryl-tRNA synthetase [Leishmania braziliensis MHOM...
28005	Strigomonas culicis	1 (0.03%)	1E-149	1-464	1-464	534	77	464	gb|EPY26152.1|	seryl-tRNA synthetase [Strigomonas culicis] gb|EPY37115.1| s...
1055687	Trypanosoma vivax Y486	1 (0.03%)	1E-154	1-466	1-466	552	75	466	emb|CCC53268.1|	putative seryl-tRNA synthetase [Trypanosoma vivax Y486]
59799	Angomonas deanei	1 (0.03%)	1E-150	1-474	1-475	537	75	475	gb|EPY41582.1|	seryl-tRNA synthetase [Angomonas deanei]
85056	Trypanosoma cruzi marinkellei	1 (0.03%)	1E-159	1-473	1-473	567	74	473	gb|EKF39213.1|	seryl-tRNA synthetase, putative [Trypanosoma cruzi marinkell...
5693	Trypanosoma cruzi	2 (0.05%)	1E-159	1-473	1-473	567	74	473	ref|XP_811974.1|	seryl-tRNA synthetase [Trypanosoma cruzi strain CL Brener] g...
679716	Trypanosoma brucei gambiense DAL972	1 (0.03%)	1E-155	1-468	1-468	556	74	468	ref|XP_828789.1|	seryl-tRNA synthetase [Trypanosoma brucei brucei strain 927/...
1068625	Trypanosoma congolense IL3000	1 (0.03%)	1E-154	1-472	1-473	553	74	473	emb|CCC95335.1|	unnamed protein product [Trypanosoma congolense IL3000]
134006	Phytomonas sp. isolate EM1	1 (0.03%)	1E-154	1-474	1-474	551	74	474	emb|CCW60459.1|	unnamed protein product [Phytomonas sp. isolate EM1]
5698	Trypanosoma rangeli	1 (0.03%)	1E-156	1-474	1-475	557	72	475	gb|AGN32950.1|	seryl-tRNA synthetase [Trypanosoma rangeli]
134013	Phytomonas sp. isolate Hart1	1 (0.03%)	1E-151	1-465	1-465	541	72	465	emb|CCW67661.1|	unnamed protein product, partial [Phytomonas sp. isolate Har...
7965	Hypophthalmichthys nobilis	1 (0.03%)	3E-65	227-411	1-194	255	61	194	gb|ACO51182.1|	seryl-tRNA synthetase [Hypophthalmichthys nobilis]
60517	Taenia asiatica	1 (0.03%)	1E-56	252-405	12-165	227	61	154	gb|ABN14955.1|	seryl-aminoacyl-tRNA synthetase 1 [Taenia asiatica]
9940	Ovis aries	1 (0.03%)	5E-85	158-394	1-245	321	59	246	gb|ABY75307.1|	seryl-tRNA synthetase [Ovis aries]
294381	Entamoeba histolytica HM-1:IMSS	1 (0.03%)	2E-83	231-474	1-243	316	58	249	ref|XP_001913612.1|	seryl-tRNA synthetase [Entamoeba histolytica HM-1:IMSS] gb|E...
52970	Rhodomonas salina	1 (0.03%)	1E-63	254-464	4-209	250	51	211	gb|ABD51956.1|	serine tRNA ligase [Rhodomonas salina]