old.robetta.org

Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530
	MGGILFITIRSGEAQLQVLRQVNESFTKADLRAFASTLHTGDILGATGVPGRTAKGELSLYATEASILAPYVCTDQALCPDLKGFVPLTDTGIKYRYRFVDMMSSPSVVQRFRKRHAITRALRDFLDARSFVEVETPVLHSVASGANAKPFVTHHNANDADLFLRVAPELHLKQCVVGGMERVYEIGRVFRNEDADRSHNPEFTTCEFYAAYHTYKDLMTMTEEILRHLALAANGTTKITVTSCVEKKPVEIDLAQPFRRVNAYDAVQEAAGVELPPPTELSTPRGLAYMSAIMLRYNIPLPSVRTAAKMFDKLIDYFITDRVVEPTFVTDHPLFMSPLAMEQRTRPGLSARFELFINGTEYCNAYSELNDPQEQYYRFQQQLLDRQTGDDEAMALDETFLKALQVGLPPTAGWGMGIDRVAMLLNGSSTIREDILFPLLRHDATSHDAKRRCKTASFFGFNHNMTLFCLNALEEEMLKRAAPTESLEKIRQLRQCLSTMQQRDMVTYAPEDGAPRGWRYEATMAVLRLFCYRGKY
tmhmm (0)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (6%)	X---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXX-------------------------------------------------XXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------------------------XX
psipred	---EEEEEEEE--EEEEEEEE------HHHHHHHHH------EEEEEEEEE-----EEEEEEEEEEEE----------------------HHHHHH--HHHH---HHHHHHHHHHHHHHHHHHHHHHH---EEEE---------------------------EEE---HHHHHHHHH-----EEEEEHHH------------HHHHEEEE----HHHHHHHHHHHHHHHHHHH----EEEE------------------EEEHHHHHHHH-----------------HHHHH----------------EEEEE---EEEEE-----EE---------HHHH-------HHHEEEEEE--EEEE--EEE---HHHHHHHHHHHHHHHH-----HHH-HHHHHHHHH--------EEEHHHHHHHHH-----HHHEE---------------------------HHHHH------HHHHHH-----HHHHHHHHHHHHH--------EEEE-------HHHHHHHHHHHHHHH-----

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    15	    0.186
  max. Y    15	    0.198
  max. S     1	    0.244
  mean S     1-14   0.191
       D     1-14   0.194    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.194 D-cutoff=0.450 Networks=SignalP-noTM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-481	alignment	4up7A_302	1-529	0.805000	--
	482-536	alignment	1l0oC_301	1-57	0.3099	PROTEIN BINDING

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
435258	Leishmania infantum JPCM5	2 (0.05%)	1E-166	1-536	1-536	592	100	536	ref|XP_001466827.1|	putative lysyl-tRNA synthetase [Leishmania infantum JPCM5] e...
5661	Leishmania donovani	3 (0.07%)	1E-166	1-536	1-536	591	100	536	ref|XP_003862729.1|	lysyl-tRNA synthetase, putative [Leishmania donovani] emb|CB...
929439	Leishmania mexicana MHOM/GT/2001/U1103	1 (0.03%)	1E-162	1-536	1-536	579	98	536	ref|XP_003877160.1|	putative lysyl-tRNA synthetase [Leishmania mexicana MHOM/GT/...
347515	Leishmania major strain Friedlin	4 (0.1%)	1E-166	1-536	1-536	590	97	536	ref|XP_001684602.1|	putative lysyl-tRNA synthetase [Leishmania major strain Frie...
420245	Leishmania braziliensis MHOM/BR/75/M2904	4 (0.1%)	1E-160	1-536	1-536	571	91	536	ref|XP_001566648.1|	putative lysyl-tRNA synthetase [Leishmania braziliensis MHOM...
28005	Strigomonas culicis	1 (0.03%)	1E-148	1-535	1-539	531	73	539	gb|EPY32983.1|	lysyl-tRNA synthetase [Strigomonas culicis]
134006	Phytomonas sp. isolate EM1	1 (0.03%)	1E-152	1-536	169-709	544	69	541	emb|CCW61774.1|	unnamed protein product [Phytomonas sp. isolate EM1]
59799	Angomonas deanei	1 (0.03%)	1E-148	1-535	44-583	531	69	540	gb|EPY34873.1|	lysyl-tRNA synthetase [Angomonas deanei]
1055687	Trypanosoma vivax Y486	1 (0.03%)	1E-150	1-535	100-637	538	66	538	emb|CCC48302.1|	putative lysyl-tRNA synthetase [Trypanosoma vivax Y486]
679716	Trypanosoma brucei gambiense DAL972	3 (0.07%)	1E-148	1-535	100-633	530	65	535	emb|CBH11638.1|	lysyl-tRNA synthetase, putative [Trypanosoma brucei gambiens...
85056	Trypanosoma cruzi marinkellei	1 (0.03%)	1E-148	1-535	115-651	531	64	537	gb|EKF38020.1|	lysyl-tRNA synthetase, putative [Trypanosoma cruzi marinkell...
999953	Trypanosoma brucei brucei strain 927/4 GUTat10.1	3 (0.07%)	1E-148	1-535	100-633	530	64	535	ref|XP_845273.1|	lysyl-tRNA synthetase [Trypanosoma brucei brucei strain 927/...
1068625	Trypanosoma congolense IL3000	1 (0.03%)	1E-141	1-535	91-624	509	63	536	emb|CCC90867.1|	putative lysyl-tRNA synthetase [Trypanosoma congolense IL300...
7234	Drosophila persimilis	2 (0.05%)	1E-107	117-447	169-500	397	47	332	ref|XP_002026761.1|	GL27002 [Drosophila persimilis] gb|EDW33743.1| GL27002 [Dros...
198635	Eristalis tenax	1 (0.03%)	2E-60	176-405	13-243	240	46	231	emb|CAM92102.1|	hypothetical protein [Eristalis tenax]
7230	Drosophila mojavensis	2 (0.05%)	1E-141	3-432	126-550	508	44	431	ref|XP_002009607.1|	GI15452 [Drosophila mojavensis] gb|EDW06924.1| GI15452 [Dros...
3880	Medicago truncatula	2 (0.05%)	1E-139	3-443	137-593	500	44	459	gb|ABN05850.1|	Lysyl-tRNA synthetase, class-2; Aminoacyl-transfer RNA synth...
6945	Ixodes scapularis	1 (0.03%)	1E-138	3-432	147-571	500	44	431	ref|XP_002433761.1|	lysyl-tRNA synthetase, putative [Ixodes scapularis] gb|EEC05...
294746	Meyerozyma guilliermondii ATCC 6260	9 (0.22%)	1E-135	3-443	143-582	489	44	447	gb|EDK37310.2|	conserved hypothetical protein [Meyerozyma guilliermondii AT...
432331	Sulfurihydrogenibium yellowstonense SS-5	1 (0.03%)	1E-134	2-443	153-575	487	44	442	ref|WP_007545878.1|	lysyl-tRNA synthetase [Sulfurihydrogenibium yellowstonense] ...