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Job 88904 [SSGCID - LeinA.18771.a] [2019-02-19] [fw1.ipd.x.x] [Structure] [Complete] BATCH:88902

Full Structure Predictions  
Model 1

chemical/x-pdb MIME type  PDB file 		Model 2

chemical/x-pdb MIME type  PDB file 		Model 3

chemical/x-pdb MIME type  PDB file 		Model 4

chemical/x-pdb MIME type  PDB file 		Model 5

chemical/x-pdb MIME type  PDB file

Click the icons below each image to download the prediction in PDB format ( PDB file )

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Features and Secondary Structure  
  
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MSTARRDALVAIEQEKQAYWAAEKLHEFDAPAPGEARPAKYLTTFPFPYMNGKLHLGHGFSLTKAEFASRFQRMMGRRSLWPFGFHVTGTPIAACAQKIAKEMQQYGNPPQFPAELLEDKPKAMVVKEPTEALGQHKSKRGKSGPAKPQWLIMQSMGIPDSEIAKFADPQYWLDYFPPIAMEDLKSFGCHIDWRRSFMTTERSPYFDRFVRWQFNILRRENLLNYGKRYCVYSPRDGQPCADHDRASGEGVLPQEYALVKLIVQNPLAQPCFAEHKDIIGDRNVVLPGATLRPETVIGQTNCWVSNKLNYKGYYVRNAKGEDEVYIMTARAARNIAYQNFYVNGQVGTDPEPLFEVEGASMVGIPLSAPLAPYTTIYTLPMATITEAKGTGVVMSVPSDSPDDYINFTQLLNKPEYRVKLGIKDEWVVPFAMIPIIDIPELGTEGAKFMCEKLKINGPNATELLEEAKKVCYQQGFYHGTMISGPYAGVKVSEAKVKTHRDMEAADQCIRYYEPVRQVISRSGDECVVALCDQWYLEYGKDDWKKLVQDHIKKMDMFFPGVRNGFEETLNWLADWPCSRTFGLGTYLPCDASHTMIIDSLSDSTIYMAYYTIDRFFNVGADGSTDLCGKADNPYGLAPEMFTDEVFEYIYHGVGDAATVAGAVRMPVESLKLMRNEFEYWYPVDLRCSGKDLIQNHLTMFLYNHAAIWPTDESKWPRAIFCNGHIQVDNEKMAKSRGNFISLREAMDMYGADATRLTCADAGDSMDDANFVRETAAGFVLKMTTLLEQAKETVERTDLRSGGYNEFDKIFNNTMNTIITRTEGFYHRMQFRMVLNTAFHELSNEYSQYKMYCDDLNVHAQLGRRYYEVVALMMMPLAPHTMEHLWQNILQHEGSVVTQPFPKPTAKLDYSLIVASRVMTIALKEIRSQVIKNAKKRGPVEEVIVYTRREYTDWQRQALEILHELYEANGNTFPEDMAKQVVARDTKIMSKALMAFMSFVKGNVEKYGEQAMSTQPVIDDAVMLSNVTHNLSRLAGVSVVRILSAEDETYKEHDAARRKCLPGEPSVALPPVVKRE
tmhmm (0) 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (1%) 
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXX----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%) 
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (7%) 
X-----------------------------XXXXXX----------------------------------------------------------------------------------XXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXX---------------------------------------------------------------XXXX-------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXX-----------------------------XXXXXXXXXXXXXXXXXXXXXX--------------------------------------------------------XXXXXXXXXXX---------------XX
psipred 
--------HHHHHHHHHHHHHH-----------------EEEEE-----------HHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH----HHHHHHH--HHHHHHHHHHHHHHHHHH---EE-----EEE-----EEEHHHHHHHHHHHH---EEE-------------HHHHHHH-----------EEEEEEEE--------HH---------EEEEEEE---------EEEEE------EEEEEE------EEEEEHHHHHHHHHHHHHHHH-------EEEEEEE-------EEE-------EEEEEE--EE------EEEEE-----HHHHHHHHHH---HHHHHHH--------------EE--------------EEEE----HHHHHHHHHHHH--HHH---------------HHHHHHHHHHHHHH----EEEEE-----------EEEEEE----EEE---HHHHHHHHHHH---EE--HHHH-HHHHHH-----EEEEE---------EEE---EEEEE---------------HH-----------------------------------------------------HHHHHHHHHH----EEEE--HHHHHHHHHHHHHHHHHHHH-------EEEEE--EE-----EEE--------HHHHHHHH--HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------EEEE-----------HHHHHHHHHHHHHHHHHHHHHHH---------EEEEEE----HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH----EEEEEE-----------HHHH------EEEEEE-----

# SignalP-4.0 euk predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    37	    0.122
  max. Y    37	    0.116
  max. S    21	    0.136
  mean S     1-36   0.104
       D     1-36   0.110    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.110 D-cutoff=0.450 Networks=SignalP-noTM


Domain Repeats Prediction     Top
  Boundary     STD (+/-)     Consensus  
------

Ginzu Domain Prediction 1       Top
Domain Span Source Reference Parent   Parent Span     Confidence     Annotations  
  1-1075     alignment     1ffyA_205     1-917   0.8046   LIGASE/RNA


PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA       Top
TaxID Species Alignments PSI-Blast Data (alignment with lowest E value)
E value Query Span Sbjct Span Bit Score Identity HSP Length Accession Description
5661Leishmania donovani2 (0.05%)0.01-10751-107510741001075ref|XP_003859311.1|leucyl-tRNA synthetase, putative [Leishmania donovani] emb|C...
435258Leishmania infantum JPCM53 (0.08%)0.01-10751-107510741001075ref|XP_001464129.1|putative leucyl-tRNA synthetase [Leishmania infantum JPCM5] ...
347515Leishmania major strain Friedlin3 (0.08%)0.01-10751-10751070961075ref|XP_001681854.1|putative leucyl-tRNA synthetase [Leishmania major strain Fri...
929439Leishmania mexicana MHOM/GT/2001/U11031 (0.03%)0.01-10751-10751070941075ref|XP_003873311.1|putative leucyl-tRNA synthetase [Leishmania mexicana MHOM/GT...
420245Leishmania braziliensis MHOM/BR/75/M29043 (0.08%)0.01-10731-10731069911073ref|XP_001563232.2|putative leucyl-tRNA synthetase [Leishmania braziliensis MHO...
59799Angomonas deanei2 (0.05%)0.01-10691-10751004691076gb|EPY24479.1|leucyl-tRNA synthetase [Angomonas deanei]
28005Strigomonas culicis2 (0.05%)0.01-10741-1086978691086gb|EPY25569.1|leucyl-tRNA synthetase [Strigomonas culicis]
679716Trypanosoma brucei gambiense DAL9721 (0.03%)1E-1051-3661-36339167366emb|CBH17309.1|leucyl-tRNA synthetase, putative, (fragment) [Trypanosoma br...
5693Trypanosoma cruzi4 (0.1%)0.01-10691-1072981661075ref|XP_805515.1|leucyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener] ...
134006Phytomonas sp. isolate EM11 (0.03%)0.01-10681-1074963661075emb|CCW61838.1|unnamed protein product [Phytomonas sp. isolate EM1]
0UNIDENTIFIED152 (3.8%)0.01-10691-1072975651075gb|ESS63479.1|leucyl-tRNA synthetase [Trypanosoma cruzi Dm28c]
134013Phytomonas sp. isolate Hart11 (0.03%)0.01-10681-1074973651076emb|CCW66784.1|unnamed protein product [Phytomonas sp. isolate Hart1]
85056Trypanosoma cruzi marinkellei1 (0.03%)0.01-10691-1072973651074gb|EKF29641.1|leucyl-tRNA synthetase, putative [Trypanosoma cruzi marinkel...
999953Trypanosoma brucei brucei strain 927/4 GUTat10.12 (0.05%)0.01-10691-1070991641074ref|XP_828454.1|leucyl-tRNA synthetase [Trypanosoma brucei brucei strain 927...
1055687Trypanosoma vivax Y4861 (0.03%)0.03-10692-1068944631073emb|CCC52910.1|putative leucyl-tRNA synthetase [Trypanosoma vivax Y486]
1068625Trypanosoma congolense IL30001 (0.03%)0.01-10691-1070985621075emb|CCC94968.1|unnamed protein product [Trypanosoma congolense IL3000]
9544Macaca mulatta2 (0.05%)1E-1523-5567-55254547558ref|XP_001095167.1|PREDICTED: leucyl-tRNA synthetase, cytoplasmic [Macaca mulat...
99883Tetraodon nigroviridis1 (0.03%)1E-151136-7322-58254246599emb|CAG11719.1|unnamed protein product [Tetraodon nigroviridis]
7176Culex quinquefasciatus3 (0.08%)1E-1663-6868-65259145686ref|XP_001848604.1|trypsin [Culex quinquefasciatus] gb|EDS28647.1| trypsin [Cul...
7209Loa loa3 (0.08%)1E-1335-5368-53448445537gb|EJD76357.1|hypothetical protein LOAG_16702 [Loa loa]



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