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Features and Secondary Structure
	1 . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 . 240 . 250 . 260 . 270 . 280 . 290 . 300 . 310 . 320 . 330 . 340 . 350 . 360 . 370 . 380 . 390 . 400 . 410 . 420 . 430 . 440 . 450 . 460 . 470 . 480 . 490 . 500 . 510 . 520 . 530 . 540 . 550 . 560 . 570 . 580 . 590 . 600 . 610 . 620 . 630 . 640 . 650 . 660 . 670 . 680 . 690 . 700 . 710 . 720 . 730 . 740 . 750 . 760 . 770 . 780 .
	MSGKKKAAEATVDLATLAEPGFWRQRVEIFEQLWQQQQNRYESMKAPIKVSLPDGKVMDAESWVTCPLDIAKRLSNSLPDKVIVARVNEALWDLTRPFEADCQLELLDWDEKDAREVFWHSSSHVLGYALERIFDTKLSVGPALEEGGFFYEGLTNRPVSESDYKAIESAMQELVKQKMPYQRLEVSKEDALRLFGYTEFKSKILASKVPDGGSCTVYRCGMLIDPCRGPHLPDTGRVKAFAVTKNSSSYLEGKAENEVLQRVYGISFPKNPMLTEWKTIQEEAAKRDHRVIGRQQNLFNFHEVSPGSAFWLPHGARIYNTLVEFLRKKYRRCGFQEVISPNMYSSKLWMVSGHWEKYADNMFCTKCEKEDFGLKPMNCPGHCIMFASQPHSYKELPIRYADFGVLHRNELSGALTGLTRVRRFQQDDAHIFCRMDQITDEMEGQMQFLSDVYGVLGFKFYFYHSTRPANKLGSEALWDQSESYLRTALNRFCGIPEELPDPLHPDQRFHYDGKPDSVKKMKALMKKAERCEDPNAWKGPTNGGDGWIENAGDGAFYGPKIDIVVEDALRRRHQCATIQLDFNLPSRFGLKYTLPAAEKDETTVSPTEKQKHADPALTASSPAVEDCVSKPKPGTYEAAVRDLGIDLELDANQARPVMIHRAILGSLERSIAILCEHFGGDWPFWLSPRQVMVVPVSASNYEYSQQVRDTMHDAGFHADVDNGAATLDKKIRNAEKARYNFILVVGQKEQDATAVNIRARGEKRLGNKSLVEAVQWLKELADTHNREY
tmhmm (0)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
low complexity (0%)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
coiled-coils (0%)	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
disordered (10%)	XXXXXXXXXXXXXXXXXXXX--------------XXXXXXXXXXXXXXX---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------------------------------------------------------------------------------------------------------------------------XXXX
psipred	--------------------HHHHHHHHHHHHHHHHHHHHHH-----EEEEE----EEEEE----HHHHHHHH-----HHEEEEEEE--EEEE---------EEEEE-------HHHHH-HHHHHHHHHHHHH--------------EEEEEE-------HHHHHHHHHHHHHHHH----EEEEEE-HHHHHHHHHH---HHHHHHHH-----EEEEEE---EEEE-------------HHHHH----------------EEEE-------HHHH--------------------EEEEEEE------EEE--HHHHHHHHHHHHHHHHHHH---EEEE------HHHHHH-HHHHH-----------HHHH-------HHHHHHH------HHHHHHHHHH-----------------EEEEEEE---HH---HHHHHHHHHHHHHHHHHHHHH----EEEEE----------HHHHHHHHHHHHHHHHHH----------------EEE----HHHHHHHHHHHHHHH-----EEEEHH-----EEEE---------HHHHHHHHH----HH----EE-HHHH-----EEEE-----------------------------------------EEEEEEE-------------EEEEEE----HHHHHHHHHHHH------------EEEEE---HHHHHHHHHHHHHHHH---EEEEE-----HHHHHHHHHH----EEEEE---HHH--EEEEEE-------EE-HHHHHHHHHHHHHHH----

# SignalP-4.0 gram+ predictions
# Measure  Position  Value  Cutoff  signal peptide?
  max. C    60	    0.115
  max. Y     1	    0.166
  max. S     1	    0.276
  mean S     1-0    0.000
       D     1-0    0.101    0.450  NO
Name=tmp_signalp_seq	SP='NO' D=0.101 D-cutoff=0.450 Networks=SignalP-TM

Domain Repeats Prediction
Boundary	STD (+/-)	Consensus
--	--	--

Ginzu Domain Prediction 1
Domain	Span	Source	Reference Parent	Parent Span	Confidence	Annotations
	1-788	alignment	1qf6A_201	1-641	0.797300	LIGASE/RNA

PSI-BLAST Sequence Hits (Top 20 by Identity)   ALL DATA
TaxID	Species	Alignments	PSI-Blast Data (alignment with lowest E value)
			E value	Query Span	Sbjct Span	Bit Score	Identity	HSP Length	Accession	Description
435258	Leishmania infantum JPCM5	1 (0.03%)	0.0	1-788	1-788	907	100	788	ref|XP_001468953.1|	putative threonyl-tRNA synthetase [Leishmania infantum JPCM5...
5661	Leishmania donovani	1 (0.03%)	0.0	1-788	1-788	911	99	788	ref|XP_003864727.1|	threonyl-tRNA synthetase, putative [Leishmania donovani] emb...
347515	Leishmania major strain Friedlin	3 (0.08%)	0.0	5-788	4-787	893	97	784	ref|XP_003722534.1|	putative threonyl-tRNA synthetase [Leishmania major strain F...
929439	Leishmania mexicana MHOM/GT/2001/U1103	1 (0.03%)	0.0	5-788	4-787	897	96	784	ref|XP_003879137.1|	putative threonyl-tRNA synthetase [Leishmania mexicana MHOM/...
420245	Leishmania braziliensis MHOM/BR/75/M2904	1 (0.03%)	0.0	1-788	1-789	897	92	789	ref|XP_001568243.1|	putative threonyl-tRNA synthetase [Leishmania braziliensis M...
59799	Angomonas deanei	1 (0.03%)	0.0	3-788	2-787	857	74	787	gb|EPY39994.1|	threonyl-tRNA synthetase [Angomonas deanei]
679716	Trypanosoma brucei gambiense DAL972	1 (0.03%)	0.0	5-788	8-799	848	69	792	emb|CBH11011.1|	threonyl-tRNA synthetase, putative [Trypanosoma brucei gambi...
999953	Trypanosoma brucei brucei strain 927/4 GUTat10.1	1 (0.03%)	0.0	5-788	8-799	848	69	792	ref|XP_844783.1|	threonyl-tRNA synthetase [Trypanosoma brucei brucei strain 9...
5693	Trypanosoma cruzi	3 (0.08%)	0.0	2-788	17-816	830	69	801	ref|XP_811024.1|	threonyl-tRNA synthetase [Trypanosoma cruzi strain CL Brener...
1055687	Trypanosoma vivax Y486	1 (0.03%)	0.0	3-739	7-753	791	69	748	emb|CCC47860.1|	putative threonyl-tRNA synthetase [Trypanosoma vivax Y486]
1068625	Trypanosoma congolense IL3000	1 (0.03%)	0.0	5-788	7-792	852	68	786	emb|CCC90392.1|	putative threonyl-tRNA synthetase [Trypanosoma congolense IL...
134006	Phytomonas sp. isolate EM1	1 (0.03%)	0.0	1-788	4-795	844	68	793	emb|CCW64848.1|	unnamed protein product [Phytomonas sp. isolate EM1]
85056	Trypanosoma cruzi marinkellei	1 (0.03%)	0.0	6-788	124-919	835	68	797	gb|EKF32126.1|	threonyl-tRNA synthetase, putative [Trypanosoma cruzi marink...
134013	Phytomonas sp. isolate Hart1	1 (0.03%)	0.0	2-788	5-795	842	66	792	emb|CCW71956.1|	unnamed protein product [Phytomonas sp. isolate Hart1]
513417	Pseudocercospora fijiensis	1 (0.03%)	1E-62	287-468	1-182	248	62	182	gb|ABL01534.1|	tRNA synthetase [Pseudocercospora fijiensis]
554373	Moniliophthora perniciosa FA553	1 (0.03%)	9E-70	274-483	1-210	272	60	210	ref|XP_002392585.1|	hypothetical protein MPER_07812 [Moniliophthora perniciosa F...
9103	Meleagris gallopavo	1 (0.03%)	1E-160	1-437	11-450	573	51	441	ref|XP_003209455.1|	PREDICTED: probable threonyl-tRNA synthetase 2, cytoplasmic-...
400682	Amphimedon queenslandica	1 (0.03%)	1E-180	7-510	1-520	639	50	521	ref|XP_003389278.1|	PREDICTED: threonyl-tRNA synthetase, cytoplasmic-like [Amphi...
225400	Myotis davidii	1 (0.03%)	1E-173	7-483	1-482	617	50	483	ref|XP_006771831.1|	PREDICTED: probable threonine--tRNA ligase 2, cytoplasmic [M...
336722	Zymoseptoria tritici IPO323	1 (0.03%)	1E-176	3-492	6-497	625	49	492	ref|XP_003848298.1|	threonine--tRNA ligase, partial [Zymoseptoria tritici IPO323...